Streptomyces lydicus A02: T261_3920
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Entry
T261_3920 CDS
T03756
Name
(GenBank) RNA polymerase sigma-F factor
KO
K03090
RNA polymerase sigma-B factor
Organism
sld
Streptomyces lydicus A02
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sld03021
]
T261_3920
Transcription machinery [BR:
sld03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
T261_3920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
Sigma70_ECF
MarR
HTH_3
DUF7343
HTH_24
DUF134
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AJT65581
LinkDB
All DBs
Position
4202845..4203702
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AA seq
285 aa
AA seq
DB search
MSVELGSSKVLPAIPAPAPHLHDQVDQVHDDEAINTRTLSRSLFLRLATLDKDCAERTYV
RDTLIELNLPLVRYAAARFRSRNEPMEDIVQVGTIGLIKAIDRFDCERGVEFPTFAMPTV
VGEIKRFFRDTSWSVRVPRRLQELRLALTKASDELAQKLDRSPTVPELALCLGVSEEDVV
DGLAVGNAYTASSLDSPSPEDEGGEGSLADRLGYEDSALEGVEYRESLKPLLAKLPPRER
QIIMLRFFANMTQSQIGEEVGISQMHVSRLLTRTLAQLREGLIAD
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtagaactgggcagctcgaaggtgcttcccgcgattcccgcgcccgcgccgcac
ctgcacgaccaggtcgaccaggtgcacgacgacgaagccatcaacacccgcacgctctcc
cgctccctgttcctgcggctggccacgctcgacaaggactgcgcggagcgcacctacgtc
cgcgacaccctcatcgagctgaacctcccgctcgtccgctacgccgcggcccgcttccgc
agccgcaacgagccgatggaggacatcgtccaggtcggcaccatcgggctgatcaaggcc
atcgaccgtttcgactgcgaacgcggagtggaattcccgacgttcgcgatgccgacggtc
gtgggggagatcaagcgcttcttccgcgacacgtcgtggtcggtacgggtcccgcgccgc
ctccaggagctgcgtctcgccctcaccaaggccagcgacgagctcgcccagaagctcgac
cggtccccgaccgtccccgaactcgccctgtgcctgggcgtgtcggaggaggacgtcgtc
gacggcctggcggtcggcaacgcctacaccgcctcctcgctggactccccgtcccccgag
gacgagggcggcgagggctccctcgcggaccgtctcggctacgaggacagcgcgctggag
ggcgtggaataccgcgagtccctcaagcccctgctggccaaactcccgccccgggagcgc
cagatcatcatgttgcggttcttcgccaacatgacgcagtcccagatcggcgaggaggtc
ggcatctcccagatgcacgtctcccgactgctcacccgcaccctggcgcagctgcgcgag
ggtcttatcgccgactga
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