Streptomyces lydicus A02: T261_4457
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Entry
T261_4457 CDS
T03756
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sld
Streptomyces lydicus A02
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sld03019
]
T261_4457
Enzymes [BR:
sld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
T261_4457
Messenger RNA biogenesis [BR:
sld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
T261_4457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_19
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
T2SSE
AAA_16
AAA_30
PhoH
SLFN-g3_helicase
TsaE
NTPase_1
SRP54
Motif
Other DBs
NCBI-ProteinID:
AJT66107
LinkDB
All DBs
Position
complement(4743190..4747212)
Genome browser
AA seq
1340 aa
AA seq
DB search
MSSQPASALPDGTAPALPSLLERLPELMLRDQQRLGRRLDGARRIRKPEARAAVLGEIAA
GIEEAELRVEQRRAAVPEVTYPEELPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQIPK
ICMELGRGVRGLIGHTQPRRIAARTVAERVAEELKTPLGEAVGWKVRFTDQVGGDTLVKL
MTDGILLAEIQTDRELRQYDTIIIDEAHERSLNIDFILGYLAQLLPKRPDLKVVITSATI
DPERFSRHFGEAPIVEVSGRTYPVEVRYRPLLEEGGQTAADFKDADRDQITAICDAVDEL
QAEGPGDILVFLSGEREIRDTADALIKKNLPLTEVLPLYARLSHAEQHRVFQRHTGRRIV
LATNVAETSLTVPGIRYVIDPGMARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRTSD
GICIRLYSEDDFLARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDRRNIKDG
IDLLSELGALDTKQKEPRKQLTPLGRKLSQLPVDPRLARMVLEADRNGCVREVMVIAAAL
SIQDPRERPSDKQQQADQQHARFKDETSDFLAFLNLWRYVREQQKALSSSAFRRMCRTEF
LNYLRIREWQDIYSQLRTVAKSMGIHLSEEDAAPDRIHSSLLSGLLSHIGLKDTDAKNEY
LGARNAKFAVFPGSALFKKPPRWVMSAELVETSRLWARVNARIEPEWVEPLAQHLVKRTY
SEPHWEQKMAAVMAYERVTLYGVPLVAQRKVAYGRIDPETSRDLFIRNALVEGDWRTHHQ
FFHDNRKLLGEVEELEHRARRRDILVDDETLFDFYDQRIPEDIVSGAHFDAWWKQKRQDE
PELLNFEHSMLINESAGAVTKDDYPDSWRQGKLKFKVTYQFEPGADADGVTVHIPLQVLN
QVSSEGFDWQIPGLREQLVTELIRSLPKPIRRNYVPAPNFAARFLDSTVPLQGALTASLA
AGLQRMVGVPVDAADFDTGRIPDHLKITFRVVDERRRKLAEAKDLEALRLKLKPKTRAAI
SKAFEQAAERPAGDRKGAKGDGAAALAGLEQRTGLTSWTIGALPRTFETRRAGQPLKAYP
ALVDEGSSVAVRLFDTEAEQLEAMWAGTRRLILLNVPSNPAKFAQGKLSNQQKLALSRNP
HGSIGALFEDCVTAAADRLIAARGGPAWDEESFRKLFDAVRADLVDATLKTIQQAQEVLA
AWQACERRLKDTTFPSLLPSLTDIKEQLAALIKPGFVTAHGAKRLPDLMRYLVAVDRRLQ
QLPTNAERDRTRMAKVKEMQDEYAWLLEQFPQGRPVPAAAREIRWMIEELRVSYFAHALG
TAYPVSDKRIVKAVDAAVPR
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcagcctgcctccgccctgcccgacggcaccgctcccgccctgccctccttg
ctggagcgtctccccgagctgatgctccgcgaccagcagcggctggggcggcggctcgac
ggtgcacgccggatccgtaaacccgaggcccgcgcggccgtgctcggcgagatcgcggcc
ggcatcgaggaggcggagctgcgggtcgagcagcggcgcgccgcggtgccggaggtcacg
tatccggaagagctgccggtcagccagaagaaggacgagatcctcgccgcgatacgtgac
caccaggtcgtgatcgtcgcgggcgagaccggctccgggaagacgacgcagatcccgaag
atctgcatggagctcggccgcggcgtccggggcctgatcgggcacacccagccgcgccgg
atcgcggcccgtaccgtcgccgagcgggtggccgaggagctgaagaccccgctgggcgag
gcggtcggctggaaggtccgcttcacggaccaggtcggcggcgacaccctcgtcaagctg
atgacggacggcattctgctcgccgagatccagacggaccgcgagctgcgccagtacgac
acgatcatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcatcctcggatat
ctggcgcagctgctgcccaagcggccggatctgaaggtggtcatcacctccgcgaccatc
gacccggagcgcttctcgcggcatttcggcgaggcgccgatcgtcgaggtctccgggcgt
acgtatccggtcgaggtgcggtaccgcccgctgctggaggagggcggccagactgcggct
gatttcaaggacgccgaccgcgaccagatcacggcgatctgcgacgcggtggacgagctg
caggccgaggggccgggcgacatcctggtctttctctccggcgagcgggagatccgcgac
accgcggacgcgctgatcaagaagaacctccccctgaccgaggtgctgccgctgtacgcc
cggctgtcgcacgccgagcagcaccgcgtgttccagcggcacaccgggcgacggatcgtg
ctggccacgaacgtcgccgagacctcgctgaccgttccgggcatccggtacgtcatcgac
ccgggcatggcccggatctcccgctacagcttccgcaccaaggtgcagcggctgcccatc
gagccggtctcgcaggccagcgccaatcagcgcaagggccgctgcggccgcaccagcgac
ggcatctgcatccggctgtattccgaggacgatttcctcgcccggccggaattcaccgat
gcggagattctccgtacgaatctggcctccgtcatcctgcagatgaccgcggccggcctc
ggcgatatcgagaaattcccgttcatcgatccgccggaccgccgcaacatcaaggacggc
atcgatctgctgagcgagctgggcgcgctggacacgaagcagaaggagccgaggaaacag
ctcaccccgctcgggcgcaagctgtcccagctgccggtggacccgcggctggcgcggatg
gtgctggaggcggaccgtaacggctgtgtccgcgaggtcatggtcatcgcggcggcgctg
tccatccaggacccgcgcgagcggccctcggacaaacagcagcaggccgatcagcagcac
gcccgcttcaaggacgagaccagcgacttcctggccttcctcaacctctggcgctatgtc
cgcgaacagcagaaggcgctgtcctcgtccgccttccgccggatgtgccggaccgaattc
ctcaactatctccggatacgcgagtggcaggacatctactcgcagctgcgtacggtcgcc
aagtccatgggcatccatctgagcgaggaggacgcggctcccgaccgtatccacagctcc
ctgctttccggtttgctttcgcatatcggactgaaggacacggacgccaagaacgaatac
ctgggcgcccgcaacgccaagttcgccgtcttccccggctccgcgctcttcaagaagccg
ccgcgctgggtgatgtccgcggagcttgtcgagacgtcccggctgtgggcgcgggtgaac
gccaggatcgagcccgaatgggtcgagccgctcgcccagcacctggtcaaacgcacctac
agcgagccgcactgggaacagaagatggccgcggtgatggcgtacgagcgggtcacgctc
tacggcgtcccgctcgtcgcccagcgcaaggtcgcctacgggcggatcgatccggagacc
tcgcgggatctgttcatccgcaatgcgctggtggagggcgactggcgcacccatcaccag
ttcttccatgacaaccgcaaactcctcggcgaggtcgaggagctggagcaccgcgcccgg
cgccgcgacattctcgtggacgacgagacgctcttcgacttctacgaccagcgcattccg
gaggacatcgtctccggcgcgcacttcgatgcgtggtggaagcagaagcggcaggacgag
ccggagctgctcaacttcgagcactcgatgctcatcaacgaatccgccggggccgtcacc
aaggacgactacccggattcctggcggcagggaaagctgaagttcaaggtcacctatcag
ttcgagcccggcgcggacgcggacggtgtaaccgtccatatccctctccaggtcctcaac
caggtctcctcggagggcttcgactggcagatcccgggcctgcgcgagcagctggtgacg
gagctgatccggtcgctgcccaagccgatccgccgcaattacgtgccggcgccgaatttc
gcggcccgtttcctggattccacggtgccgctgcagggcgccctgacggcctctctggcc
gcgggtctccagcggatggtgggggtccccgtcgacgccgccgacttcgacaccggcagg
atccccgaccatctcaagatcaccttccgggtggtcgacgaacggcgccgcaagctcgcc
gaggccaaggacctggaggcgctgcggctgaagctcaagccgaagacccgggccgccatc
tccaaggccttcgagcaggccgccgagcggccggccggggaccgcaagggtgcgaagggc
gacggcgcggcggcgctggccggcctcgagcagcgcacggggctgacgtcctggacgatc
ggcgcgctgccgcgcaccttcgagacccggcgcgcgggccagccgctgaaggcgtacccg
gcactggtggacgagggcagcagtgtcgccgtacggctcttcgacaccgaggccgagcag
ctggaggcgatgtgggcgggcacccgccgcctcatcctgctcaacgtcccctccaacccc
gccaagttcgcccagggcaagctgagcaatcagcagaagctggcgctgtcccgtaatccg
cacggctcgatcggggccctcttcgaggactgcgtgacggccgcggcggaccggctgatc
gcggcgcggggcggcccggcgtgggacgaggagtccttccgcaagctgttcgacgcggtg
cgggccgatctggtggacgccaccctgaagaccattcagcaggcccaggaggtgctggcc
gcctggcaggcgtgcgagcggcgtctgaaggacacgacgttcccctcgctgctgccgtcg
ctgacggacatcaaggagcagctggcggcgctgatcaagccggggttcgtcacggcgcac
ggcgccaagcggctgccggatctgatgcgctatctggtggccgtcgaccgccgtctccag
cagctgcccaccaacgccgaacgggaccgcacccggatggcgaaggtgaaggagatgcag
gacgaatacgcctggctgctggagcagttcccccaggggcgcccggtgccggccgcggcc
cgggagatccgctggatgatcgaggagctgcgggtgagctacttcgcgcatgcgctgggg
accgcgtatccggtctcggacaagcgcatcgtgaaggccgtggacgccgccgtaccgcgg
tga
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