Streptomyces lydicus A02: T261_4976
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Entry
T261_4976 CDS
T03756
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sld
Streptomyces lydicus A02
Pathway
sld03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T261_4976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sld03400
]
T261_4976
Enzymes [BR:
sld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T261_4976
DNA repair and recombination proteins [BR:
sld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
T261_4976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJT66612
LinkDB
All DBs
Position
5285056..5288622
Genome browser
AA seq
1188 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVKAAADGHRPHVDLVGPPAARPFAVAALARESGRPVLAVTA
TGREAEDLAAALRSLMPAGEDNSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLVHPRQ
DDPTAGPVSVVVAPIRSVLQPQVKGLGELEPVSLRTGQSADLEEVVDGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDEVRQRAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLWGIADVRDRAREL
GMMWWSVSQFTSGDIGRSADGEAGAGDDTLKLGMHAPESYRGDTQRALSDTKQWLADGWR
TVFVTEAHGPAARTVEVLGGEGIAARLDADLPEISPSLVHVACGSIDNGFIDPQLKIAVL
TETDLSGQKAAGKDAARMPARRRKTIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATR
EYLLVEYAPAKRGQPGDRLYIPTEQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVK
EIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPM
DRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYGQFPVNVKA
LSRFQTDTEAKATLEGLREGSVDLVIGTHRLFSAETKFKDLGLVIVDEEQRFGVEHKEQL
KKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAI
RRELLREGQVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESQLEQVVVDFWEKKF
DVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPL
TETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEA
VADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLAAYRAIASAATEEDIAAV
REELTDRYGKLPEPVENLLLVAGLRMLARACGVSDITLQGSNVRFGPVELRESQELRLKR
LYPRTVLKPATKQVLVPRPTTGRIGGKPLVGRELLAWVGEFLTTVLGS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtc
aaggccgcggccgacggccaccggccgcatgtggacctggtcggcccgccggccgcccgg
cccttcgcggtggcggcgctggcccgcgagtccggccgcccggtgctcgcggtgaccgcc
accggacgcgaggccgaggacctcgccgccgcgctgcgcagcctgatgcccgccggcgag
gacaactccgtcgtcgagttcccctcctgggagacgctgccgcacgagcggctctcaccg
cgctcggacaccgtcggccgccgcctggcggtgctgcgccggctcgtccacccgcgccag
gacgacccgaccgccggccccgtctccgtcgtcgtcgccccgatccgttccgtgctccag
ccgcaggtcaagggcctgggcgagctggagccggtgagtctgcgcacggggcagagcgcc
gacctcgaggaggtcgtggacgggctggcggcggccgcctacgcacgcgtcgaactggtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgcccaccgag
gagcatccgctccgggtcgagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcggtccctggaagtcgccgagcacggtctgtgggcgccgccgtgccgc
gagctgctgctgaccgacgaggtgcggcagcgggccgcggcgctcgccgaacagcacccg
gagctgggcgaactcctcggcaagatcgccgaggggatcgccgtcgagggcatggagtcc
ctggcccccgtcctcgtcgacgacatggaactgctgctggacgtcctgcccaagggcagc
atggccgtggtctgcgacccggagcgggtacggacccgggccgccgacctggtggccacc
agccaggagttcctgcaggcgtcctgggcggcgagtgcgggcgggggagaggcgccgatc
gacgtcggcgcggcctccctctggggcatcgcggacgtccgcgaccgggcccgtgagctg
ggcatgatgtggtggtcggtgtcgcagttcacctctggtgacatcgggcgcagtgccgac
ggcgaagcgggcgccggcgacgacaccctcaagctcggcatgcacgccccggagagctac
cgcggcgacacccagcgcgcgctctccgacaccaagcagtggctcgccgacggctggcgc
acggtcttcgtcaccgaggcccacggccccgcggcccgtacggtcgaggtgctcggcggc
gagggcatcgccgcccgcctggacgcggacctgccggagatctccccgtccctcgtccat
gtcgcctgcggttcgatcgacaacggcttcatcgacccgcagctcaagatcgccgtcctg
accgagaccgacctgtccggccagaaggcggccggcaaggacgcggcccggatgccggcc
cgccgccgcaagaccatcgacccgctcaccctccaggccggcgacttcatcgtccacgag
cagcacggcgtcggccgctacatcgagatggtgcagcgcacggtccagggcgccacccgc
gaatacctcctggtcgagtacgcccccgccaagcgcggccagcccggcgaccgcctctac
atccccaccgagcagctggaacaggtcaccaagtacgtgggcggcgaggccccgacgctg
caccgcctgggcggcgccgactggaccaagaccaaggcgcgcgccaagaaggccgtcaag
gagatcgcggcggacctgatcaagctgtactcggcacggatggcggcccccggccacacc
ttcggcccggacaccccctggcagcgcgagctggaggacgccttcccgtacgcggagacg
cccgaccagctcaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccgatg
gaccgtctgatctgcggcgacgtcggttacggcaagaccgagatcgcggtccgcgccgcc
ttcaaggccgtccaggacggcaagcaggtggccgtcctcgtgcccacgaccctcctcgtc
cagcagcactacggcaccttcaccgagcgctacggccagttcccggtcaacgtcaaggcg
ctctcccgcttccagaccgacaccgaggccaaggcgacgctggagggcctgcgggagggc
tcggtcgacctcgtcatcggcacccaccgcctgttctccgccgagaccaagttcaaggac
ctgggcctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggaacagctc
aagaagctccgcgccaacgtggacgtgctgaccatgtcggccacccccatcccccgcacc
ctggagatggcggtcacgggcatccgcgagatgtccacgatcaccacgccccccgaggag
cgccacccggtcctgacgttcgtcggcccctacgagcagaagcagatcggcgccgccatc
cgccgtgaactcctgcgcgagggccaggtcttctacatccacaaccgcgtcgagtccatc
gaccgggccgccgcccgcctccgcgagatcgtccccgaggcccgtatccagaccgcccac
gggcagatgggcgagtcccagctcgagcaggtcgtcgtcgatttctgggagaagaaattc
gacgtcctcgtctcgaccacgatcgtcgaatcgggcatcgacatctccaacgccaacacc
ctgatcgtcgagcgcggcgacaacttcggcctctcccagctccaccagctgcgcggccgc
gtcggccggggccgcgaccggggctacgcctacttcctctacccgccggagaagccgctc
accgagaccgcccacgagcggctggccaccattgcccagcacaccgagatgggcgccggt
atgtacgtcgccatgaaggacctcgagatccgcggcgccggaaacctcctgggcggcgaa
cagtccggccatatcgccggcgtcggcttcgatctctacgtacggatggtgggcgaggcg
gttgccgactaccgcgcttcactcgaggggggcgtggaggaggagcctccgctggaggtc
aagatcgaactcccggtggacgcccatgtcccgcacgactacgcgcccggcgagcggctg
cgcctggcggcctaccgcgccatcgcctccgcggccacggaggaggacatcgccgcggtc
cgcgaggagctgaccgaccgctacggcaagctgccggagccggtcgagaacctcctcctg
gtcgccggtctgcgcatgctcgcccgcgcctgcggcgtctcggacatcaccctccagggc
tccaacgtccgcttcggaccggtggaactgcgggaatcgcaggagctgcgcctgaagcgg
ctctatccgcggacggtcctcaagccggccaccaagcaggtcctggtgccccgcccgacc
acgggcaggatcggcggcaagccgctggtggggcgggagctgctggcgtgggtgggggag
ttcctcacgacggttctggggtcgtga
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