Streptomyces lydicus A02: T261_5472
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Entry
T261_5472 CDS
T03756
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sld
Streptomyces lydicus A02
Pathway
sld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T261_5472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sld03019
]
T261_5472
03009 Ribosome biogenesis [BR:
sld03009
]
T261_5472
Enzymes [BR:
sld01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
T261_5472
Messenger RNA biogenesis [BR:
sld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T261_5472
Ribosome biogenesis [BR:
sld03009
]
Prokaryotic type
rRNA processing factors
T261_5472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
AJT67095
LinkDB
All DBs
Position
5854044..5857754
Genome browser
AA seq
1236 aa
AA seq
DB search
MLEPIEPTGSTQSPDRGFDDNNSPGDTLPPRRRRRAASRPAGPPAAATAAEAVVSTDVPA
AQPVADEDVASAVTTGDAAKPVRTRRRATRKATAPAGAPQVSEAEVAPVAVEAPEPVAAE
VAPAAVQEDEAKPVRTRRRATRKATAPAGAPQVSEAEVAPVAVEAPEPVAAEVAPAAVQE
DEAKPVRTRRRATRKATAPAGAPQAGEAEEAAAPAAPAAVAAAEEPVEEPAEEAKPVRTR
RRATRKVTAAEEAAPVAEPAEPKRRARRRGERIAEPVAEAPRAEEAAAPRAEEEAAPEAP
VRGRRRAQRPPTAVFQAPVFTEPMFQTPETAAAAHAAARQEEAAAEPEEQPAGPRRRRRR
GAPVEPQAAAPVEEQAVEEPEEAAEPEEAEEQAAHGEEEAGERPSRRRRRGGRRRRRGEA
AEGAEEQPGEEAEAEAAAEAEEQGAEEPEEAEEQPVGGSSSSRRRRRRRRRAGETAEPGE
PGADEPERTVVKIREPRKKEEAAPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITE
AEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLP
SMEAAFVDIGKGRNAVLYAGEVNFEALGMSNGPRRIETALKSGQSVLVQVTKDPIGHKGA
RLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGAS
EDELARDVQRLQAQWEEIQKKAKASSTSSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGD
DAWETIHGYVSHVAPDLVDRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDK
TEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLES
NRDLVLRRMLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSESCVHCNGRGVIV
HMDQPTTVGGGGKRKKKGKAAPAEPVEPHVHEVEAAEPTPDGGAPELEPAAVTEAELQPA
VAGADEWFSSPAEAEAAAGRGRGRRRVSRKVSAPAGAPKAAEEAAAIVLPAEPVAEPVAE
PEPVAAPAAEAPVAEPAPPRARRRVTRKVSAPVGSPEAAEVAAATVVVTAPVTEPVEEPA
VEAVAEPVTGPEAEPEAAPAAKKTAKKATAKKAAAKKTAAKKTTAKKAAAKKTTTAKKAT
AKKTTAKKATTKKTAAKKTAAAEQTSAASVSASAED
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccaattgagcccaccgggtccacgcagtccccggaccgtggattcgacgac
aacaattcgcccggagacaccctgccgccgcgccgcaggcgccgtgcggcgtcccggccg
gccggtccgccggcggccgcgacggccgccgaagcggtggtgagcaccgatgtcccggcg
gctcagcccgtcgccgacgaggacgtcgcctctgcggtcaccaccggggacgcggccaag
ccggtccgtacccgtcgccgtgcgacccgtaaggcgactgcgcctgcgggtgcgccgcag
gtgagtgaggccgaggtggcgccggtggccgttgaggcgcctgagccggttgctgccgag
gtggcgcccgccgccgtccaggaggacgaggccaagcccgtgcgtacgcgtcgccgtgcg
acccgtaaggcgactgcgcctgcgggtgcgccgcaggtgagtgaggccgaggtggcgccg
gtggccgttgaggcgcctgagccggttgccgccgaggtggcgcccgccgccgtccaggag
gacgaggccaagccggtccgtacgcgtcgccgtgcgacccgcaaggccaccgcccccgcc
ggggccccgcaggccggcgaggccgaggaggcagccgctccggccgctcccgccgccgtg
gccgccgcggaggagcccgtcgaggaaccggccgaggaggccaagcccgtccgcacgcgc
cgccgcgccacccgcaaggtgaccgcggccgaggaagccgcccccgtggccgagcccgcc
gagcccaagcgccgggcgcgccgccgtggcgagcgcatcgcggagccggtcgccgaggcg
ccgcgcgccgaagaggccgccgcgccccgcgccgaggaggaggccgcgccggaggccccg
gtgcgcggccgccgccgggcgcagcgtccgccgaccgccgtcttccaggcgccggtcttc
accgagccgatgttccagactcccgagaccgcggccgccgcgcacgccgcggcccgccag
gaggaggccgccgccgagcccgaggagcagcccgccggcccgcgccgccgtcgccgtcgc
ggcgccccggtggagccgcaggccgccgcgcccgtcgaggagcaggccgtcgaggagccc
gaggaggcggccgagcccgaggaggccgaggagcaggccgcgcacggcgaggaggaagcc
ggcgagcgcccctcgcgccgccgccgccgtggtggccgtcgccgccgtcgcggtgaggcc
gccgagggtgccgaggagcagcccggtgaggaggcggaggccgaggccgccgccgaggcc
gaggagcagggcgccgaggagcccgaggaggcggaggagcagcccgtcggcggctccagc
agcagccgtcgccgccgtcgtcgccgtcgccgtgcgggcgagaccgccgagccgggcgag
ccgggcgccgacgagccggagcgtacggtcgtcaaaattcgcgagccgcgcaagaaggaa
gaagcggcgccctccgacgaggtgcagtcgatcaagggatcgacgcgactggaggccaag
aagcagcgccgccgtgagggccgcgagcagggccgccgccgggtgccgatcatcaccgag
gcggagttcctcgcccgccgcgaggccgtcgagcgggtgatggtcgtccgccagagcggc
gagcgcacccagatcggcgtcctcgaggacaacgtgctcgtcgagcacttcgtcaacaag
gagcaggcgaccagctacgtcggcaatgtctacctgggcaaggtgcagaacgtcctgccg
tccatggaggccgccttcgtcgacatcggcaagggccgcaacgccgtgctgtacgccggt
gaggtcaacttcgaggcgctgggcatgtccaacggcccgcgccgcatcgagaccgcgctg
aagtccggccagtcggtgctggtgcaggtcaccaaggaccccatcggccacaagggcgcc
cgcctgaccagccaggtctcgctgcccggccgctacctggtctatgtgcccgagggctcg
atgaccggtatcagccgtaagctcccggacaccgagcgtgcgcggctgaagcagatcctc
aagaagatcgtccccgaggacgcgggcgtcatcgtccgcaccgccgcggagggcgcgagc
gaggacgagctggcgcgcgacgtccagcgcctgcaggcgcagtgggaggagatccagaag
aaggcgaaggcctcttccacgagctccccgtcgctgctctacggcgagccggacatgacc
gtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggtgac
gacgcctgggagaccatccacggctatgtctcgcacgtcgccccggacctcgtcgaccgg
ctccagaagtggacctcggacgtcgatgtcttcgcgacgtaccggatcgacgagcagctg
atgaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgacaag
accgaggccatggtcgtgatcgatgtcaacaccggcaagttcaccggccagggcggcaac
ctcgaagaaaccgtgacgaggaacaacctcgaagcggccgaggagatcgtccgccagctg
cggctgcgcgacctcggcggcatcgtcgtcatcgacttcatcgacatggtgctggagtcc
aaccgtgacctggtgctgcggcggatgctggagtgcctgggccgggaccgtacgaagcac
caggtcgccgaggtcacctcgctgggcctggtccagatgacccgtaagcgggtcggccag
gggctgctggagtccttctccgagtcgtgtgtgcactgcaacggccgcggcgtcatcgtc
cacatggaccagccgacgacggtcggcgggggcggcaagcgcaagaagaagggcaaggcc
gcgccggccgagccggtcgagccgcacgtccacgaggtcgaggccgccgagccgacgccg
gacggcggtgcgccggagctggagcccgccgcggtgacggaggccgagctgcagcccgcg
gtggccggtgccgacgaatggttcagcagcccggcggaggccgaggcggctgccgggcgt
ggccgtggccgccgtcgcgtgagccggaaggtgtccgctccggcgggtgcccccaaggcc
gccgaggaggccgccgcgatcgtgctgccggccgagccggtggcggagccggtcgccgag
ccggagcccgttgcggcgccggccgccgaggctccggtggccgagcccgcgccgccgcgt
gcccgccgccgggtgacccgcaaggtgtccgccccggtgggttcgccggaggccgccgag
gtggccgcggcgacggtcgtcgtcacggcgccggtgacggagcccgtcgaggagccggcc
gtcgaggcggttgccgagccggtgacggggccggaggccgagcccgaggccgcgcccgcc
gccaagaagacggcgaagaaggcgacggccaagaaggccgcggccaagaagacggctgcg
aagaagaccacggccaagaaggcggcggcgaagaagaccaccaccgccaagaaggccacg
gcgaagaagaccaccgcgaagaaggccaccacgaagaagacggcggccaagaagaccgcc
gccgccgagcagacctcggcagcgtcggtgtccgcctccgcggaggactga
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