Streptomyces leeuwenhoekii: sle_31340
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Entry
sle_31340 CDS
T04414
Symbol
sle_31340
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sle
Streptomyces leeuwenhoekii
Brite
KEGG Orthology (KO) [BR:
sle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sle03016
]
sle_31340 (sle_31340)
Enzymes [BR:
sle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
sle_31340 (sle_31340)
Transfer RNA biogenesis [BR:
sle03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
sle_31340 (sle_31340)
Prokaryotic type
tRNA splicing ligases
sle_31340 (sle_31340)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CQR62595
UniProt:
A0A0F7VS33
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Position
chromosome:complement(3733380..3734573)
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AA seq
397 aa
AA seq
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MSYVELPGARVPIRMWTDPASVEEVALQQLRNVATLPWIEGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSRIEQAIPVGRGMHDDPVDPG
RLHGFATAGWDGFWERFGSVAEAVRFRAERAARQMGTLGGGNHFVEVCLDADGAVWLMLH
SGSRNIGKELAEHHIGVARQLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYARYNR
SIMMALLKDVIRKEFKKAKPAFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNDKAFNSASHGAGRRMSRNAAKRRFTTQDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagctgccgggcgcgcgggtgccgatccggatgtggaccgaccccgcc
tcggtggaggaggtggcgctgcagcagttgcggaacgtcgccacgctgccgtggatcgag
ggactggccgtgatgcccgacgtgcactacggcaagggcgccacggtcggctccgtcatc
gccatgcggggcgcggtgtgcccggcggcggtgggcgtcgacatcgggtgcgggatgtcc
gccgtgaagacgtcgctgacggcgaacgacctgccgggggacctgtcccggctgcggtcg
cggatcgagcaggcgataccggtgggacgcgggatgcacgacgacccggtcgaccccggg
cggctgcacgggttcgcgacggccggatgggacggcttctgggagcggttcggctcggtc
gccgaggcggtccgcttccgtgcggagcgcgcggcccggcagatggggacgctgggcggc
ggcaaccacttcgtcgaggtgtgcctggacgccgacggagccgtctggctgatgctgcac
tccggctcccgcaacatcggcaaggaactggccgagcatcacatcggcgtggcccggcag
ctcccccacaaccagggcctggtcgaccgcgacctcgccgtcttcgtggcggacacgccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaggtacaaccgc
tcgatcatgatggccctcctgaaggacgtgatccgcaaggagttcaagaaggcgaagccc
gccttcgagccggagatcagcgcgcaccacaactacgtggccgaggagcgctacgacggc
atggacctgctcgtcacccgcaagggcgcgatccgcgcaggctcgggcgactacggcatc
atcccgggctccatgggcacgggttcgtacatcgtcaggggcctcgggaacgacaaggcg
ttcaactcggcctcgcacggcgccggccggcgcatgagccgcaacgccgccaagcggcgc
ttcaccacccaggacctggaggagcagacccggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gatctggtggaggtggtggcgaagctcaagcaggtcgtctgcgtgaagggctga
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