Streptomyces leeuwenhoekii: sle_41700
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Entry
sle_41700 CDS
T04414
Symbol
sle_41700
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sle
Streptomyces leeuwenhoekii
Pathway
sle03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
sle_41700 (sle_41700)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sle03400
]
sle_41700 (sle_41700)
Enzymes [BR:
sle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
sle_41700 (sle_41700)
DNA repair and recombination proteins [BR:
sle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
sle_41700 (sle_41700)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CQR63629
UniProt:
A0A0F7VSY5
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All DBs
Position
chromosome:4880719..4884252
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAITAAADGNRPHVDLVGPPAARPFAVAALARETGRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNDIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERARALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAL
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSLADVRERARELDMM
WWSVSPFAADEELGTDTLKLGMHAPDTYRGDTARALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDADLGEMSPSVVHVACGCIDHGFVDPVLKLAVLTETDLTGQKAAG
RDGTRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHSFAPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFSERYAQFPVNVRALSRFQTETEAKA
VLEGLRDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYMRMVGEAVADYRRQLETGE
VEEEQPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGSILKPTA
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLASVLDS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgccctcgcggaagcgatc
acggcggccgccgacggcaaccgcccgcacgtcgatctggtcggtcccccggcggcccgc
cccttcgcggtcgccgcgctcgcccgcgagacgggccgccccgtgctcgccgtgacggcg
accggccgggaggcggaggacctcgccgccgccctgcgctcgttgctgccacccgagggc
gtggtggagtacccctcctgggagaccctcccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctggccgttctgcgccgcctcgcccacccccgccccgacgacccc
gagaccggcccggtctccgtggtggtcgcccccgtgcggtccgtgctgcagccgcaggtc
aaggggctcggcgacctggagccggtggcgctgcgcaccgggcagagcgccgatctgaac
gacatcgtcgaggccctggccgccgccgcgtacgcacgcgtggagctggttgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacggactgtgggcgccgccctgccgcgagctgctg
ctcaccgacgaggtgcgggagcgggcgcgggccctggcggaggaccacccggagctgggc
gagctgctcggcaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtcctggtcgacgacatggagctgctgctcgacgtgctgcccaagggcgcgatggccctg
gtgtgcgacccggagcgggtgcggacgcgggccgccgacctggtggcgaccagccaggag
ttcctccaggcgtcctgggcggccaccgccggaggcggcgaggcgcccatcgacgtcggc
gcggcctcgctgtggtccctcgccgacgtacgggagcgggcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgaggaactgggcaccgacaccctcaagctg
gggatgcacgcccccgacacctaccgcggcgacaccgccagggcgctcgccgacaccaag
ggctggctcgccgacggttggcgcacggtcttcgtcaccgagggccacggccccgccgcc
cgcaccgtcgaggtgctcggcggcgagggcatcgcggcccgcctggacgcggacctcggc
gagatgagcccctccgtcgtccacgtggcctgcggctgcatcgaccacggcttcgtcgac
cccgtgctcaagctggccgtcctgaccgagaccgacctgaccggccagaaggccgccggc
cgggacggcacccggatgcccgcccggcgccgcaagaccatcgacccgctcaccctggag
gccggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cggaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggtggtgaggcccccaccctgcaccgcctgggcggagccgactggacgaagaccaag
gcgcgggccaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcc
cgcatggccgcccccggccactccttcgcgccggacaccccctggcagcgggagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccgtctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtgcgggccgccttcaaggccgtgcaggacggcaagcaggtggccgtc
ctggtgcccaccaccctgctggtgcagcagcactacggcacgttctccgagcgctacgcc
cagttcccggtgaacgtcagggcgctgtcccggttccagaccgagaccgaggccaaggcg
gtcctggagggcctgcgcgacggctcggtggacgtcgtcatcggcacccaccgactgttc
tcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtggagcacaaggagcagctcaagaagctccgtgccaacgtcgacgtgctcaccatg
tccgccacgcccatcccccgcacgctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcggcacccggtcctcaccttcgtcgggccctacgag
gagaagcagatcggcgcggcgatccgccgtgagctgctgcgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgtgccgccgcccgcctgcgggacatcgtcccc
gaggcccgcatcgccaccgcccacggccagatgtcggaacaggccctggagcaggtcgtc
gtcgacttctgggagaagaagttcgatgtgctggtctcgacgacgatcgtggagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaccttcggcctctcc
cagttgcaccagctccgcggccgggtcggccgtggccgcgagcgcggttacgcctacttc
ctctacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtatgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccggccatatcgccggtgtcggcttcgacctg
tatatgcggatggtcggcgaggcggtcgcggactaccggcggcagctcgagacgggcgaa
gtcgaggaggagcagccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgggccatcgcctccgcc
aacaccgaggaggacatcaaggccgtacgggaggaactggtcgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggcgggcctgcggatgctggcgcgcgcctgc
ggcgtcggcgagatcgtgctccagggcaccaacatccggttcgcgccggtggagttgcgc
gagtcgcaggagctgcggctcaagcggctgtacccgggcagcatcctcaagccgacggcg
caccaggtcctcgtaccgcgcccgaagaccgcgaaggtcggcggcaagccgctggtcggg
cgggaactgctcgcgtgggtgggcgagttcctggcgtcggtgctggactcgtag
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