Streptomyces leeuwenhoekii: sle_46370
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Entry
sle_46370 CDS
T04414
Symbol
sle_46370
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sle
Streptomyces leeuwenhoekii
Pathway
sle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sle_46370 (sle_46370)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sle03019
]
sle_46370 (sle_46370)
03009 Ribosome biogenesis [BR:
sle03009
]
sle_46370 (sle_46370)
Enzymes [BR:
sle01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
sle_46370 (sle_46370)
Messenger RNA biogenesis [BR:
sle03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
sle_46370 (sle_46370)
Ribosome biogenesis [BR:
sle03009
]
Prokaryotic type
rRNA processing factors
sle_46370 (sle_46370)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CQR64095
UniProt:
A0A0F7VWE1
LinkDB
All DBs
Position
chromosome:5456016..5460527
Genome browser
AA seq
1503 aa
AA seq
DB search
MLEPTEPTQGSEPNTPSDSLPPRRRRRAASRPAGPPVASSDTPVETVTPAIPAAGSDALA
QAQVTADADAVGDEEESAAQEAVAQQAAAPDAEEPAPAGRRRRRVVRRASAPAGAPASAE
TAETVLPAAPAAEAAPAAVTGAPEAAEAVQAPEAAESAAPRRTRRRATRTVTSPSATGQP
AQSADAAQSAEAAPAVEPAPAAAPAGTADETPDTPGTPDTAGTPAAESAGEEAAAPRRTR
RRATRRVSAPAGAPETAASSAEAPAQAPVQAEAPAQDEAPAQAEAAAPARTRRGRKDTAV
TQAPEAPAAEAPEQAAQAEQADQAAQAAPAEEPAPRRTRRRTVRKAATGFAEPARPAGAS
DSEADAPRRPARPAVAVFQPPVFAEPKFQTPERAAAEAAAVAAGAERVEETEDTEAAEAT
EEFTQEQATGSRRRRRRRGAAADERPEPVADEEPEAPEARETEAPEEPEAEEPEESEDED
AEGAEGAEGAEEGGSRRRRRRGGRRRRRGESGEGADADSEELAAEQAAQDAEDTAEQVEE
DTEEGTDEDGADEHAFAGNGTSSSRRRRRRRRRAGDTSADTEPSADDPERTVVKVREPRK
PAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHG
DRTQIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAG
EVNFEALGMSGGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGS
MTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIQK
KAKNGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWQTIHGYVSHVAPDLAERLQ
RWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLE
ETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQV
AEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPSAAAGGGKRRKRARAGA
GEQPHEHEAVAVETAETAEQEAEAESEAEVAAEAAEPAALPAPDFAPDEELYSSIAEAEA
AAGRGRTRRRTSRRASAPAGAPRGEAAPAGKGRAEKPRKAAAEQPQDEKAVVAASAEQGA
GAEVPTAQDVTAEQEAARPVRQESAAEALAEPAAVEDAVVAAPAPEAPAAEAAVTEEEAA
PKGRTRRRATRRASAPAGSPAGAEAAVVTVPESAPAAPEAAPQAEEAAPAASAEQPETAA
EPAAPARPRRRAVRKAAAPTAPAEAAVVVLPAATEPAAEPEAPAQEAPVQEAAASEAPAA
EPAAEGPEAAEAAASEAPAAEPAAEGPEAAEAAEEAVAAKKTARKTAKKATAKKAATKKT
AATKKTAATKAATAKKTAAKKTTAKKAAAKKTATKTAARKTAAKKTAAAEQTAPSVSAST
DEV
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgagcccactcagggttccgaaccgaacactccgagcgacagcctg
ccgccgcgtcgtcggcgccgggccgcttcccggccggcgggtccgccggtcgcctcctcc
gacacgccggtggagacggtgacgccggccataccggccgccgggagcgacgcactcgcc
caggcccaggtcaccgcggacgccgacgccgtcggtgacgaagaggagtccgcggcgcag
gaagccgtggcccagcaggccgcggcccccgacgccgaagagcccgcgcccgcgggacgg
cgccgccgccgtgtcgtacggcgtgcctccgcgcccgccggggcccccgcgtcggcggag
acggccgagaccgtcctccccgcggcccccgccgccgaggccgcacctgccgccgtcacc
ggggcccccgaagccgccgaggcggtccaggcgcccgaggcggccgagagtgccgctccg
cgccgcacccggcgccgtgccacgcgcacggtgacctcgccctccgcgaccgggcagccg
gcccagtccgccgatgccgcccagtccgccgaggccgccccggccgtggagccggcgccc
gccgccgcaccggccggaaccgccgacgagacccctgacacgccgggcacccctgacact
gccgggacgccggccgccgagagcgccggcgaggaggccgcggctccgcgccggacccgg
cgccgcgccacgcgccgggtgtccgcgcccgccggggcgcccgagacggccgcgtcgtcc
gccgaggcccccgcgcaggcccctgtgcaggcggaggccccggcgcaggacgaggccccc
gcgcaggcggaggccgccgcaccggcccggacccgccgcggccgcaaggacaccgccgtg
acccaggcccccgaggcccccgccgccgaggctcccgagcaggccgcccaggccgagcag
gccgaccaggcggcccaggccgcgccggccgaagagcccgctccgcgccgcacccggcgc
cggaccgtccgcaaggcggccaccggtttcgccgagcccgcccggcccgccggggcctcc
gactcggaggccgacgcgccgcggcgcccggcgcgtcccgccgtcgccgtgttccagccg
ccggtgttcgccgagccgaagttccagaccccggagcgggccgccgccgaggcggctgcc
gtggccgccggagccgagcgcgtcgaggagaccgaggacaccgaggcggccgaggcgacc
gaggagttcacgcaggagcaggccaccggctcgcgccgtcgtcgccgtcgccgcggtgcg
gccgccgacgagcgcccggagcccgtggccgacgaggagcccgaggcccccgaggcccgg
gagaccgaagcgccggaggagcccgaggccgaggagccggaggagtccgaggacgaggac
gccgagggcgccgagggcgccgagggcgccgaggagggcggctcgcgccgccgtcgccgc
cggggcggccgtcgtcgccgccggggcgagtccggcgagggcgcggacgccgactccgag
gagctcgccgccgagcaggccgcccaggacgccgaggacaccgccgagcaggtggaggag
gacaccgaggagggtacggacgaggacggggccgacgagcacgctttcgccggcaacggc
accagcagcagccgtcgccgccgtcgccgtcgccgtcgcgccggggacacctccgccgac
accgagccctccgccgacgaccccgagcgcaccgtcgtcaaggtccgcgagccgcgcaag
cccgccgagccgtccgacgaggtgcagtccatcaagggctcgacccgcctggaggcgaag
aagcagcgccgccgcgagggccgcgagcagggccgccgccgggtgccgatcatcaccgag
gccgagttcctggcccgccgcgaggccgtcgagcgggtcatggtcgtccgccagcacggc
gaccgcacccagatcggcgtcctggaggacggcgtgctcgtcgagcactacgtcaacaag
gagcagtcgacctcgtacgtcggcaacgtctacctcggcaaggtgcagaacgtgctgccg
tcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctctacgccggc
gaggtcaacttcgaggcgctcggcatgtcgggcgggccgcgccgtatcgagtccgccctg
aagtccgggcagtccgtgctcgtccaggtgacgaaggaccccatcggccacaagggcgcc
cgcctcaccagccaggtctccctgcccggccggtacctggtctacgtgcccgagggctcc
atgaccggcatcagccgcaagctgcccgacaccgagcgggcccggctgaagaccatcctc
aagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagc
gaggacgagctgcgccgtgacgtcgagcgtctccaggcgcagtgggaggagatccagaag
aaggccaagaacggcaacgccccgacgctgctgtacggcgagccggacatgacggtccgg
gtcgtgcgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggcgacgacgcg
tggcagaccatccacggctacgtctcgcacgtcgcgccggacctcgccgagcggctccag
aggtggacctccgaggtcgacgtcttcgccacgtaccggatcgacgagcagctcgccaag
gccctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgaccggaccgag
gcgatggtcgtcatcgacgtcaacaccggcaagttcaccggccagggcggcaacctggag
gagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctccggctg
cgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtccaaccgg
gatctggtgctgcgccgcctgctggagtgcctgggccgcgaccgtacgaagcaccaggtc
gccgaggtgacctcgctggggctcgtgcagatgacccgcaagcgggtcggccagggcctg
ctggagtcgttctcggagacctgcgtccactgcaacgggcgcggcgtcatcgtccacctg
gaccagccgtccgccgccgcgggcggcggcaagcgccgcaagcgggcccgggccggtgcc
ggcgagcagccgcacgagcacgaggccgtggccgtcgagaccgccgagacggcggagcag
gaggcggaggccgagtccgaggccgaggtggccgccgaggccgccgagccggccgccctc
ccggcgcccgacttcgcgccggacgaggagctgtacagcagcatcgccgaggcggaggcc
gcggcgggtcgcggacgcacccggcgccggacgagccggcgggcgtcggctccggcgggt
gcgccccgcggcgaggccgcaccggccggcaagggccgggcggagaagccgcggaaggcc
gctgccgagcagccgcaggacgagaaggccgtcgtggcggcgtcggcggagcagggcgcg
ggggcggaggtgcccacggcccaggacgtcacggccgagcaggaggccgcgcgtccggtg
cgccaggagtcggccgccgaggcgctggccgagcccgccgccgtcgaggacgccgtcgtc
gcggcgccggcccccgaggctccggccgccgaggcagcggtcaccgaggaggaggccgcg
cccaagggccgcacccgtcgccgggcgacccgccgggcgtccgcgcccgccgggtccccg
gccggggcggaggcggccgtggtgacggtccccgagtccgcaccggcggcgcccgaggcg
gcgccgcaggccgaggaggccgccccggcggcttcggcggagcagccggagaccgccgcc
gagccggccgcgccggcccgtccgcggcgccgcgccgtgcggaaggccgccgcgccgacc
gcgcccgcggaggccgccgtcgtggtcctcccggccgccaccgagccggccgccgagccg
gaagccccggcccaggaggctccggttcaggaggccgcggcttcggaggctcccgccgcc
gagccggccgccgagggcccggaagcagccgaggccgcggcttcggaggctcccgccgcc
gagccggccgccgagggcccggaagcagccgaggccgccgaagaggccgtcgcggccaag
aagacggcgcgcaagacggccaagaaggccacggcgaagaaggcggccacgaagaagacc
gcggccaccaagaagaccgcggccaccaaggcggcgacggccaagaagacggccgcgaag
aagacgaccgccaagaaggcggcggccaagaagaccgccaccaagacggcggccaggaag
acggccgccaagaagaccgcggcggccgagcagacggctccgtccgtctcggcctccacc
gacgaggtctga
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