Streptomyces liliifuscus: JEQ17_25780
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Entry
JEQ17_25780 CDS
T08169
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slf
Streptomyces liliifuscus
Brite
KEGG Orthology (KO) [BR:
slf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slf03032
]
JEQ17_25780 (topA)
03400 DNA repair and recombination proteins [BR:
slf03400
]
JEQ17_25780 (topA)
Enzymes [BR:
slf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JEQ17_25780 (topA)
DNA replication proteins [BR:
slf03032
]
Prokaryotic type
DNA Topoisomerases
JEQ17_25780 (topA)
DNA repair and recombination proteins [BR:
slf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JEQ17_25780 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QQM42503
UniProt:
A0A7T7I7J6
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All DBs
Position
5997137..5999965
Genome browser
AA seq
942 aa
AA seq
DB search
MSPTSETAHGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPEQYTGE
VRRLGVDVDNDFQPIYVVNADKRAQVKKLKDLLKDSDELFLATDEDREGEAIAWHLQEVL
KPKVPVKRMVFHEITKAAIQAAVANPRELNQKLVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFGTGRAGDASDPASLVARLTAVD
GKRVAQGRDFDSLGQIKGANTLHLDEANARALAAALENTNFSVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTTLSDTAITAARAQVTQLYGA
SYLPDKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFKLYELIWKRTVASQMK
DAVGNSVTVKIAGTASDGRDAEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQV
NEGDPLSAEEISVDGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIARGEAQAIPWLRRFYFGEGD
ATGAAEAGNGDGDHLGGLKELVTDLGAIDAREVSSFRVDGSDIMLRVGRYGPYVERGEKD
SENHQRADVPEDLAPDELTVELAEELLAKPSGDFELGADPQSGHQIIARDGRYGPYVTEV
LPEGTPKTGKNAVKPRTASLFKSMSLDTVTLADALKLMSLPRVVGKDAEGVEITAQNGRY
GPYLKKGTDSRSLQAEDQLFTITLDEALAIYAQPKQRGRAAAKPPLKELGADPVSGQPVV
VKDGRFGPYVTDGETNATLRSGDSVEEITPERGFELLAEKRAKSPAKKTAKKAAAKKAPA
KKAPAKKTAAKKTAATKTAAKKTTAKKTTAKKATASRATAED
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcacacggcggccgccgactcgtcatcgtcgagtcgccc
gccaaggcgaagacgatcaagggctatctcggccccggctacgtcgtcgaagcgagcgtc
gggcacatccgcgacctccccaacggcgccgcggaggtgcccgagcagtacaccggcgag
gtgcgccgcctcggtgtggacgtcgacaacgacttccagccgatctacgtggtcaacgct
gacaagagggcccaggtcaagaagctcaaggacctgctcaaggactccgacgaactcttc
ctcgccaccgatgaggaccgcgagggcgaggccatcgcctggcacctccaggaggtgctg
aagcccaaggtcccggtcaagcggatggtcttccacgagatcaccaaggccgcgatccag
gccgccgtcgccaacccgcgcgagctcaaccagaagctggtcgacgcccaggagacccgc
cgcatcctcgaccgtctctacggctacgaggtctcgccggtcctctggaagaaggtcatg
ccgcgtctgtcggcgggccgtgtccagtccgtggcgacccgcctggtcgtcgagcgggag
cgcgagcgcatcgccttccgctccgccgagtactgggacctgaccggcacgttcggcacc
ggccgcgccggtgacgcgagcgacccggcctccctggtcgcccgtctgaccgcggtcgac
ggcaagcgcgtcgcccagggccgcgacttcgactcgctcggccagatcaagggcgcgaac
acgctccacctcgacgaggccaacgcccgcgcgctggccgccgccctggagaacacgaac
ttctccgtacggtccgtcgagtcgaagccgtaccgccgttcgccgtacgcgccgttccgt
acgacgacgctccagcaggaggccagccgcaagctcggcttcggcgcgaaggccacgatg
caggtggcgcagaagctgtacgagaacggcttcatcacctacatgcgtacggactccacg
accctctcggacaccgcgatcaccgcggcccgggcccaggtcacgcagctctacggcgcg
agctatctgccggacaagccgcgtacgtacgccgggaaggtcaagaacgcgcaggaggcg
cacgaggcgatccgcccctcgggtgatcgtttccgcacgccggccgagacgggtctgacc
ggtgaccagttcaagctgtacgagctgatctggaagcggaccgtcgcctcccagatgaag
gacgcggtcggaaactccgtcaccgtgaagatcgcgggcacggcctccgacggccgtgac
gccgagttcagcgcgtccggcaagaccatcaccttccacggcttcctcaaggcctacgtc
gagggcgcggacgacccgaacgccgagctggacgaccgcgagcgccgccttccgcaggtc
aacgagggcgacccgctgtccgccgaggagatctcggtcgacggccacgcgaccaagccc
ccggcccgctacaccgaggccagcctggtcaaggagctcgaagagcgcgagatcggccgc
ccgtcgacgtacgcgtcgatcatcggcacgatcctcgaccgcggctatgtgttcaagaag
ggcacggcactcgtcccgtccttcctgtccttcgccgtggtcaacctcctggagaagcac
ttcgggcggctcgtcgactacgacttcaccgccaagatggaggacgacctcgaccgcatc
gcgcggggcgaggcccaggccattccgtggctcaggcgcttctacttcggcgagggcgac
gcgaccggcgccgcggaggccggcaacggcgacggggaccacctcggcggtctcaaggag
ctcgtcaccgacctcggtgccatcgacgcccgcgaggtctcgtcgttccgcgtggacggc
agcgacatcatgctgcgcgtcggccgctacggcccctacgtcgagcgcggcgagaaggac
tccgagaaccaccagcgcgccgacgtgcccgaggacctggcgcccgacgagctgaccgtc
gagctcgcggaggagctgctcgccaagccgagcggtgacttcgagctcggcgccgacccc
cagtcgggccaccagatcatcgccagggacggccgctacggcccgtacgtcaccgaggtg
ctccccgagggcaccccgaagaccggcaagaacgccgtgaagccgcgtacggcctcgctg
ttcaagtcgatgtccctcgacacggtgacgctggccgacgccctcaagctgatgtcgctg
ccgcgcgtcgtcggcaaggacgccgagggcgtggagatcaccgcacagaacgggcgctac
gggccgtacctgaagaagggcaccgactcgcgctccctccaggccgaggaccagctcttc
acgatcaccctcgacgaggccctggcgatctacgcacagcccaagcagcgcgggcgcgcc
gccgccaagccgccgctgaaggagctcggcgcggacccggtcagcgggcagcccgtcgtc
gtcaaggacggccgcttcggtccgtacgtcaccgacggcgagaccaacgccaccctgcgg
tccggcgacagcgtcgaggagatcactccggagcgcggcttcgagctgctcgcggagaag
cgcgcgaagtcgcccgccaagaagacggcgaagaaggcggccgccaagaaggccccggcc
aagaaggcgccggcgaagaaaaccgccgccaagaagaccgcggccacgaaaacggcagca
aagaagaccactgccaagaagacgaccgcaaagaaggcgacggcttcccgggcgacggcc
gaggactga
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