Streptomyces liliifuscus: JEQ17_26500
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Entry
JEQ17_26500 CDS
T08169
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slf
Streptomyces liliifuscus
Brite
KEGG Orthology (KO) [BR:
slf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slf03016
]
JEQ17_26500
Enzymes [BR:
slf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JEQ17_26500
Transfer RNA biogenesis [BR:
slf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JEQ17_26500
Prokaryotic type
tRNA splicing ligases
JEQ17_26500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QQM42623
UniProt:
A0A7T7I7T1
LinkDB
All DBs
Position
6177550..6178743
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWADPASVEDVAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKVEQAIPVGRGMHDSPIEPG
RFHGLATSGWDDFWGRFDGVAEAVKFRQGRATKQMGTLGSGNHFVEVCTDTTGSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQGLVDRDLAVFIADTPQMGAYRNDLFWAQEYAKYNR
TLMMALLKDVVRKEFKKAKPTFEPEISAHHNYVAEERYEGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFSTKDLEEQTQGVECRKDSG
VVDEIPSAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggaagtgccgggcgcgaaggttccgatccgtatgtgggcggacccggcg
tcggtcgaggacgtcgcgatgcagcagctccgcaacgtctcgacgctgccttggatcaag
ggcctcgccgtcatgccggacgtccatttcggcaagggcgcgacggtcggttccgtgatc
gccatgcagggtgctgtgtgtcccgcggcggtcggggtcgacatcggctgcgggatgtcc
gcggtcaggacgtccctgacggccaacgacctgccgggtgacctttcccggctgcgctcg
aaggtcgagcaggccattcctgtggggcgggggatgcacgacagcccgatcgagcccgga
cgattccacgggctggccacttcgggctgggacgacttctgggggcgcttcgacggtgtg
gccgaagcggtcaagttccgtcaggggcgggcgacaaagcagatggggacgcttggatcc
ggaaatcactttgtggaagtgtgcacggatacgaccggttctgtttggctgatgctgcac
tccggttcgcggaacatcggcaaggaactggccgagcaccacataggaattgcgcagaag
ctcccgcacaaccagggtctggtcgatcgcgacctcgccgtattcatcgcggacaccccg
cagatgggggcgtaccgcaacgacttgttctgggcgcaggagtacgcgaagtacaaccgc
acgctcatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggcgaagccg
accttcgagccggagatcagcgcgcaccacaactacgtggccgaggagcggtacgagggc
atggacctgctggtcacccgcaagggcgcgatccgcgcgggctccggcgagtacgggatc
atcccgggctcgatgggcacgggttcgtacatcgtgaagggcctcggcaacgagaaggcc
ttcaactcggcctcgcacggggcgggccggcgcatgagccgtaacgccgccaagcgtcgc
ttctcgacaaaggatctggaggagcagacgcagggtgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgagcgcgtacaagccgatcgagcaggtcatcgaccagcagcga
gacctcgtagaggtcgtggcaaagctgaagcaggtcgtgtgcgtgaagggctga
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