Streptomyces liliifuscus: JEQ17_30855
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Entry
JEQ17_30855 CDS
T08169
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slf
Streptomyces liliifuscus
Pathway
slf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JEQ17_30855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slf03019
]
JEQ17_30855
03009 Ribosome biogenesis [BR:
slf03009
]
JEQ17_30855
Enzymes [BR:
slf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JEQ17_30855
Messenger RNA biogenesis [BR:
slf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JEQ17_30855
Ribosome biogenesis [BR:
slf03009
]
Prokaryotic type
rRNA processing factors
JEQ17_30855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QQM43365
UniProt:
A0A7T7RE75
LinkDB
All DBs
Position
7160735..7164904
Genome browser
AA seq
1389 aa
AA seq
DB search
MLEPTEPAEPSNGSENSTPSDTLPPRRRRRAASRPAGPPSGNPEGESVAGTTAPAIPAVS
STDLVTEEPEETEEAAVAAEAVTAEKAVTETSVTDEPAAEAAPAPRTRRRATRRASAPAG
APQAAETAQAAGAGAPGATAVTEEAVVAAPAVQAEPEAPVAEPVAEEPAAEAAPAPRTRR
RATRRATAPAGAPTETEAAEVVVTAGAEEAAVASTPATTTAPAEAEAEAEEAPAVEAEDA
APKGRTRRRATRRATAPTGAPQAEAEVPVTAPAEAPAEPARRATPPEAERAETPTATEPV
EADVRDERREAPVAAAKNDRAPEADTTTDVEDGAPRRARRRATRKAAGGFAAPAPDKSAE
TEKDSSRRPARPAVAVFQAPVFTEPMFQTPERAAAAAAAEAADEPEDVVEPVQEAAPVAE
EETGGSRRRRRRKAEEPAAPVAEAPEPEEEPVDEESAEDTADDSAEGDDGEETGSRRRRR
RGGRRRRRGESAEADGDSADGDDYTAEQSEQAAQDAEDTAEQTEEDAEDEREESGGSSSS
RRRRRRRRRAGDSSGEAESGDSDPERTVVKVREPRSKKEERADASDEVQSIKGSTRLEAK
KQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNK
EQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESAL
KSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTIL
KKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKGGNAPTLLYGEPDMTVR
VVRDIFNEDFTKVIVSGDEAWETIHGYVAHVAPDLADRLSRWTSEVDVFATYRIDEQLAK
ALDRKVWLPSGGSLVIDKTEAMIVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRL
RDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGL
LESFSETCVHCNGRGVIVHMEQPTSAGGGGKRKKRGRGGADQTHDHEHTHETETAEPEET
EAEVVAEAAEPVALPEPEFVPDEDLYSSAAEAEAAATRGRSRRRAGRRASAPAGAPRSES
RRSERRSEAPTAQSVTSEDEVGRPVQPEQAATAQAEPAAAEDPVVEAPAAAAPAVEDAAP
KGRTRRRATRKATAPAGSPKAAEETVVTVTEPVAAPVESKAEPVAEPEPQPEPATDSAAP
PRARRRAVRKATAPTAPAETAVVVVPSASAEAPAEARTEAAEAPADAPAEASGDGEAPAK
KTARKTVKKATAKKAAAKKTTTAKKTAAKKTVAKKTAKTAKTAAKSTSKKTAAAEQQTPS
TVTASTDEG
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccgctgagccctccaacggctccgagaacagcactcccagc
gacaccctgccgccgcgcaggcgtcgtcgcgccgcgtcccgccccgcgggaccgccctcc
gggaaccccgagggcgagagcgtggccgggaccaccgcgccggccataccggccgtgagc
tccaccgatctcgtgacggaggagccggaggagaccgaagaggcggctgtggccgctgaa
gcggtgaccgccgagaaggctgtcactgagacgtctgtcaccgacgagccggcggccgag
gctgccccagcgccgcgtacgcgccgtcgggccacccgtcgtgcgtccgcccccgccggt
gcgccgcaggccgccgagacggcgcaggccgctggggccggagcgcccggcgcgaccgcc
gtgaccgaagaggccgtcgtcgccgctccggccgtacaggcggagcccgaggcgcccgtc
gccgagcccgtggccgaggagcccgcagccgaggctgctccggcgccccgtacacgccgt
cgcgccacgcgccgcgccaccgcacccgccggtgcgcccaccgagaccgaggccgccgag
gtcgtagtgaccgctggggccgaagaggccgccgtggcctcgacccctgccacgaccacc
gccccggccgaagccgaagccgaagccgaagaggcgccggccgtcgaggccgaggacgcc
gcacccaagggccgtacgcgccgccgggccacccgtcgggccaccgcgcccaccggcgcg
ccgcaggccgaggccgaggtgcccgtgacggcgcccgccgaggcccccgccgagcccgcc
cgccgcgccaccccgcccgaggcggagcgcgccgagacccccaccgcgaccgagcccgtc
gaggccgatgtccgcgacgagcgcagggaggcccccgtggccgctgccaagaacgaccgg
gcccccgaggccgacaccaccaccgacgtcgaggacggcgccccgcgccgcgcccgccgc
cgtgccacgcgcaaggccgccggaggcttcgccgcgcccgcgcccgacaagagcgcggag
accgagaaggactcctcgcggcgccccgcgcgtcccgcggtcgccgtgttccaggcgccc
gtgttcaccgagccgatgttccagacgccggagcgcgccgcggccgccgccgctgccgag
gccgccgacgagcccgaggacgtcgtggagccggtccaggaggccgcccccgtcgccgag
gaggagaccggcggatcgcgcaggcgccgccgcaggaaggccgaggagcccgccgccccc
gtggcggaggcccccgagcccgaggaggagcccgtcgacgaggagtccgctgaggacacc
gccgacgactccgccgagggtgacgacggcgaggagaccggttcgcgccgtcggcgccgt
cgtggcggccgtcgccgccgccggggcgagtccgccgaggcggacggcgactcggccgac
ggtgacgactacaccgccgagcagtccgaacaggctgcccaggacgccgaggacaccgcc
gagcagacggaagaggacgccgaggacgagcgcgaggagtcgggcggctccagcagcagc
cgtcgccgtcgtcgccgccgtcgtcgcgccggtgactcgtccggcgaggccgagtcgggc
gacagcgaccccgagcgcacggtcgtcaaggtccgtgagccgcgcagcaagaaggaagag
cgggccgacgcctcggacgaggtgcagtccatcaagggctcgacccgtctggaggccaag
aagcagcgccgccgcgaggggcgcgagcagggccgccgccgtgttccgatcatcaccgag
gccgagttcctggcccgccgtgaggccgtcgagcgcgtgatggtcgtccgccagagcggc
gagcgcacccagatcggcgtccttgaggacaacgtgctcgtcgagcactacgtcaacaag
gagcagtcgacctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccg
tcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctgtacgccggt
gaggtcaacttcgaggcgctgggcatggccaacggcccccgccgcatcgagagcgcgctg
aagtccggccagtcggtcctcgtgcaggtcaccaaggacccgatcggccacaagggcgcc
cgcctcaccagccaggtctccctccccggccgctacctggtctacgtgcccgagggctcg
atgaccggcatcagccgcaagctgcccgacaccgagcgcgcgcgtctgaagaccatcctc
aagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagc
gaggacgagctgcgccgtgacgtcgagcggctccaggcgcagtgggaggacatccagaag
aaggcgaagggcggcaacgcgccgacgctgctctacggcgagccggacatgaccgtccgc
gtcgtccgcgacatcttcaacgaggacttcaccaaggtcatcgtgagcggcgacgaggcg
tgggagaccatccacgggtacgtggcccatgtcgcgcccgacctggccgaccgcctgtcg
aggtggacctccgaggtcgacgtcttcgcgacgtaccggatcgacgagcagctcgccaag
gcgctggaccgcaaggtctggctgccgagcggcggttcgctggtcatcgacaagaccgaa
gcgatgatcgtcatcgacgtcaacaccggcaagttcaccggtcagggcggcaacctcgaa
gagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctgcggctg
cgcgacctcggcggcatcgtcgtcatcgacttcatcgacatggtcctggagtccaaccgc
gatctggtgctgcgccgcctcctggagtgcctgggacgcgaccgtacgaagcaccaggtc
gccgaggtgacctcgctgggcctcgtccagatgacccgtaagcgggtcggccagggcctg
ctggagtcgttctccgagacctgcgtccactgcaacggccgtggcgtgatcgtgcacatg
gagcagcccacctccgccggaggcggcggcaagcgcaagaagcgcggccgtggcggcgcc
gaccagacccacgaccacgagcacacgcacgagacggagacggccgagcccgaggagacg
gaagccgaggtcgtcgcggaggccgccgagccggtcgcgctgcccgagcccgagttcgta
ccggacgaggacctctacagcagcgccgccgaggcggaggccgcggccacgcgtggccgt
tcgcggcgtcgtgccggtcggcgcgcgtcggccccggcgggtgcgccgaggtccgagagc
cgtcgctccgagcgccgctcggaggctcctacggcccagtccgtgacgtcggaggacgag
gtcgggcgtcccgtgcagccggagcaggccgccaccgcgcaggccgagcccgccgctgcc
gaggacccggtggtcgaggccccggcggccgcggcccccgccgtcgaggacgccgcgccc
aaggggcgtacgcgccgtcgggcgacccgcaaggccaccgcgcccgccggttcgcccaag
gccgcggaggagaccgtggtgaccgtcaccgagccggtcgccgcacccgtcgagtccaag
gcggagccggtcgccgagcccgagccgcagccggagcccgccacggacagcgccgccccg
ccgcgggcgcgccgccgtgcggtccgtaaggccaccgctccgaccgcgcccgcggagacg
gccgtcgtggtcgtcccctcggcctcggcggaggctcccgcggaagcccggacggaggcc
gccgaggcccctgccgacgcccctgcggaggcgtccggcgacggagaggccccagccaag
aagacggcccgcaagacggtcaagaaggcgaccgccaagaaggccgcggcgaagaagacg
acgacggccaagaagacggccgccaagaagaccgtggccaagaagacggcgaagaccgcc
aagacggccgcgaagtcgacgtcgaagaagaccgcggcggcggagcagcagactccgtcc
accgtcacggcctccaccgacgagggctga
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