Streptomyces liliifuscus: JEQ17_34600
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Entry
JEQ17_34600 CDS
T08169
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
slf
Streptomyces liliifuscus
Brite
KEGG Orthology (KO) [BR:
slf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slf03019
]
JEQ17_34600 (hrpB)
Enzymes [BR:
slf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JEQ17_34600 (hrpB)
Messenger RNA biogenesis [BR:
slf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JEQ17_34600 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_22
ResIII
AAA_30
Helicase_RecD
AAA_25
AAA
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QQM44023
UniProt:
A0A7T7RET9
LinkDB
All DBs
Position
complement(8037868..8040450)
Genome browser
AA seq
860 aa
AA seq
DB search
MIRYDALDLLPVRGALPGLGDALDAHGGAVLVAPPGTGKTTLVPLVLAGLVGDGPMRRVV
VAEPRRIAARAAARRMAWLLGEKVGESVGYTVRGERVVGPRARVEVVTTGVLLQRLQRDQ
ELAGVDVVVLDECHERHLDADTVAAFLLDVQAALRPELRLVAASATTDAEGWARLLGEVP
VVEAEGVSYPVEVVWAPPVRPVRPPHGMRVDPVLLTHVASVVRRALSERDGDVLCFLPGV
GEIARVAGQLGGLGDVEVLQVHGRAPAAVQDAVLSGGTRRRVVLSTSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSALATVRASQAAGRQRAGRAGREAPGAVYRCWAEAEDGRLSR
FPAPEIKVADLTAFALQAACWGDPDASGLALLDPPPGGAMAAARGVLEAIGAVGSDGRPT
ERGVRMSRLGLHPRLGRALLDAGHSVGAERAAEVVALLSEEPPREYGDDLAAALRAARRG
GDAYAGRWRTEVRRLRSASAPAPSAPRDALFDTCGPSVAGRAVPRAPDGARLGEAPTDDR
AVGLVAALAFPERVARKQGGSFLMVSGTRAEVGDGSGLRDASWIAVAVADRPVGAGHARV
RLGAVVDEAVAREAAGALYGKSDEVRWADGDVVARRVERLGAVELTVRPLRNAEPGLVRE
ALLEGLREEGFGVLRWSRDAEVLRQRLGFLRHRLGAPWPDVSDDALHARVDEWLEPELGR
ARRRADLERIDAGQALGRLLPWASGEAARFDELAPERIEVPSGSRIRVDYADPERPVLAV
KLQEMFGARESPAVAGVPVVVHLLSPAGRPAAVTADLVSFWRDGYRGVRAELRGRYPKHP
WPEDPATAEPTRHTNARLRR
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgctctggacctcctgcccgtccgcggtgcgctgcccggcctgggc
gacgccctggacgcgcacggcggtgccgtgctggtcgcgccgcccggcaccggcaagacg
accctcgtgccgctcgtgctcgccggtctggtcggcgacgggcccatgcgccgtgtcgtg
gtcgccgagccgcggcggatcgcggcgcgggcggccgcgcggcggatggcgtggctgctt
ggcgagaaggtcggcgagagcgtcgggtacaccgtgcgcggggagcgggtggtcgggcca
cgcgcgcgcgtggaggtcgtcacgaccggtgtgctgctgcaacggctgcagcgggaccag
gaactggcgggcgtcgacgtggtcgtgctcgacgagtgccacgaacggcatctggacgcc
gacacggtggccgcgttcctgttggacgtacaggccgcgctgcgccccgagctgcggctg
gtggccgcctccgccacgaccgacgccgaggggtgggcgaggctgctgggcgaggttccg
gtggtcgaggcggagggcgtgtcctacccggtcgaggtggtctgggcgccgcccgtacgc
cccgtacggccgccgcacggcatgcgggtggacccggtgctgctgacgcacgtggcgtcg
gtggtgcggcgggcgctttccgaacgcgacggggacgtcctgtgcttcctgcccggtgtc
ggggagatcgcgcgggtcgccgggcagctcggcgggctcggtgatgtcgaggtgcttcag
gtgcacgggcgggcgccggccgcggtgcaggacgcggtgctgtccgggggtacgcggcgc
cgggtggtcctctcgacgtcggtggccgagtcgtcgctgacggttccgggcgtgcgggtg
gtcgtggactccgggctcgcgcgcgagccccgggtcgatcacgcgcgggggctgagcgcg
ttggcgacggtacgggcctcgcaggcggccggccggcagcgggcggggcgcgccgggcgc
gaggcaccgggcgcggtgtaccggtgctgggccgaggctgaggacgggcggctgtcgcgt
ttcccggcgccggagatcaaggtggccgacctgacggcgttcgccctccaggcggcctgc
tggggcgatcccgacgcgtcggggctggcgctgctggatccgccgccgggaggcgccatg
gcggccgctcggggcgttctggaggccatcggcgcggtgggctccgacgggcgtccgacg
gagcggggtgtacggatgtctcggctcgggttgcatccgcggctggggcgggcgttgctg
gacgcggggcactccgtgggtgcggagcgcgctgctgaggtggttgccctgttgagtgag
gagccgcctcgggagtacggggatgatcttgccgctgccttgcgggcggcgcggcgtggg
ggtgacgcctatgccgggcggtggcgcaccgaagttcggcgactgcggtccgcgtcggcg
cccgcgccgagcgctccgcgggatgcgctgttcgatacatgcgggccgtccgtggctggt
cgcgcagttccccgcgcccctgatggggcgcgccttggcgaagcccctaccgacgaccgt
gccgtggggctcgtcgccgccctcgcctttcccgagcgggttgcccggaagcaagggggc
tcttttctcatggtgtccggtactcgggccgaggtgggggacgggagtgggctgcgggac
gcctcgtggatcgctgtcgccgttgccgatcggcccgtcggtgcggggcacgcgcgcgtg
cggctcggggccgtggtggacgaggcggtcgcgcgcgaggcggccggggccctgtacggc
aagagcgacgaggtgcgctgggccgacggggacgtcgtggcgcggcgggtcgagcggctg
ggcgcggtggagttgaccgtacggccgttgcggaacgccgagcccgggctcgtaagggag
gctcttcttgaggggttgagggaggaagggttcggggtgctgcggtggtcccgggacgcc
gaggtgctgcggcagcggctcgggttcctgcgtcaccggctcggtgccccctggcccgat
gtgtcggacgacgcgctccacgcgcgcgtggacgagtggctggagccggagttgggccgg
gctcggcggcgggccgatctggagcggatcgacgccgggcaggcgttgggccggctgttg
ccgtgggcgtccggggaggcggcccggttcgacgagttggcgccggagcgcatcgaggtg
ccgagcgggtccaggatccgggtggactacgcggatccggaacggcccgtgctggcggtg
aagttgcaggagatgttcggggcgcgggagtcgccggccgtcgccggggtgcccgtggtc
gtgcatctgctgtcgcccgcgggccgcccggccgccgtgacggccgacctggtgtccttc
tggcgggacggctaccggggcgtacgggcggagctgcgcggccggtatccgaagcatccg
tggcccgaggacccagccaccgccgaaccgacccggcacacgaacgcgcgcctcaggcgc
tga
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