Staphylococcus lugdunensis HKU09-01: SLGD_01620
Help
Entry
SLGD_01620 CDS
T01177
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
slg
Staphylococcus lugdunensis HKU09-01
Pathway
slg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLGD_01620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slg03019
]
SLGD_01620
03016 Transfer RNA biogenesis [BR:
slg03016
]
SLGD_01620
Enzymes [BR:
slg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SLGD_01620
Messenger RNA biogenesis [BR:
slg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLGD_01620
Transfer RNA biogenesis [BR:
slg03016
]
Prokaryotic type
tRNA degradation factors
SLGD_01620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_2
KH-I_KHDC4-BBP
SPATA25
Spt6_S1
OB_PDCD11
Motif
Other DBs
NCBI-ProteinID:
ADC87711
LinkDB
All DBs
Position
complement(1671929..1674025)
Genome browser
AA seq
698 aa
AA seq
DB search
MSQEKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLT
VNYEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSA
DPDCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVA
GHKDAVNMVEAGASEITEQEMLEAIFFGHDEIKRLVEFQQQIVDHLQPVKSEFIPVERDE
ALVSRVQALTEEKGLKETVLTFDKKQRDDNLDELKAEIAAEFIDEADPENELLINEVHAI
LNDLVKEEVRRLIADEKIRPDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTL
GALGDYQIIDGLGPEQEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIP
DTSKFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYT
ILTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDH
MLQTIDHPRAELSAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIY
IGAVDQAMINRSKEIIEAITREAEVGQIYDAKVKRIEKYGAFVEIFSGKDALLHISQISK
DRINKVEDVLKIGDTIKVKITEIDKQGRVNASHKVLVE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaaaagaaagttttcaaaactgaatgggccggccgttcattaacaatagag
acaggacaattagctaagcaagctaacggtgctgttttggtacgttatggcgatacagtt
gtcttatcaactgctgttgcgtcaaaagaaccacgtgatggtgactttttcccattaaca
gtaaattatgaagaaaaaatgtatgctgctggtaaaatccctggtggctttaaaaaaaga
gaaggtcgtcctggagatgaagcgacattaacagcacgacttatcgatagaccgattaga
cctttgtttcctaaaggatataaacatgatgttcaaattatgaatatcgtcttaagtgca
gatcctgattgctcacctgaaatggcagcgatgattggttcatcaatggcgcttagcgta
tctgatattccattccaaggtccaattgccggtgtgaatgttggttatgtagatggcaaa
tatgttattaatcctacattggaacaaaaagagcaatctcgtttggatttagaggttgca
gggcataaagatgctgttaatatggttgaagccggtgcaagtgaaatcacagaacaggaa
atgttagaggctattttctttgggcatgatgaaataaaacgtcttgttgaattccaacaa
caaattgttgatcatctccaaccagttaagtcagagtttattccagttgaacgcgatgaa
gcgttagttagtagagtacaagcattaacagaagaaaaaggtcttaaagaaacggtgtta
acattcgataaaaaacaacgtgatgataacttagacgagttaaaagcggaaattgcagca
gaatttatagacgaagctgatcctgagaatgaattgctaattaatgaagttcatgcaatt
ttaaatgatctagttaaagaagaagtacgtcgtcttattgcagacgaaaaaatccgacct
gatgggcgtaaaccagatgagattcgtcttttagaatctgaagttggtattttaccaaga
gcacatgggtcaggattgtttacacgtggacaaactcaagcattgtctgtattgacactc
ggagccttaggtgattatcaaattattgatggtttaggacctgaacaagaaaaacgattt
atgcatcattataattttcctaatttctcagttggtgaaacgggtcctgtaagagcacca
ggacgtcgagaaatcggacatggtgctttaggtgaacgcgcattacgtcacattattccg
gatacatctaaattcccttatacaataagaatcgtgagtgaagtacttgaatctaatggt
tcatcttcacaagcatctatttgtggttctactttggccttaatggatgcaggtgtacca
attaaagcaccggttgcaggtattgcgatgggtcttgttacacgtgaagacagctataca
atcttaacagacatacaaggtatggaagatgccttaggagacatggatttcaaagttgct
ggtacaaaagatggtattacggcaatccaaatggatattaagattgatgggttaacacgt
gaagttattgaagaggctttagaacaggcacgtaaaggtcgcttagcgattatggaccac
atgttacaaacgattgatcatccacgtgctgagcttagtgcatacgcaccaaaagtagaa
attatgcacattaatccagataaaattagagatgtcattggacctggaggcaaaaaaatc
aatgaaattattgatgaaacaggtgtgaaattagatattgaacaagatggaacaatttat
attggggctgtagatcaagcaatgattaatcgttcaaaagaaatcattgaagcgattaca
cgtgaagctgaagttggtcaaatttatgatgcaaaagtaaaacgtattgaaaaatatggt
gcgtttgtagaaatattctcaggcaaagatgcattattacacatttctcaaatttcaaaa
gaccgcattaataaagttgaagatgtcttgaaaattggagatacgattaaagttaaaatc
actgaaatcgataaacaaggtcgcgtcaatgcctctcataaagtacttgttgaataa
DBGET
integrated database retrieval system
