Sulfurovum lithotrophicum: YH65_08305
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Entry
YH65_08305 CDS
T03877
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slh
Sulfurovum lithotrophicum
Pathway
slh03030
DNA replication
slh03430
Mismatch repair
slh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YH65_08305
03430 Mismatch repair
YH65_08305
03440 Homologous recombination
YH65_08305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slh03032
]
YH65_08305
03400 DNA repair and recombination proteins [BR:
slh03400
]
YH65_08305
Enzymes [BR:
slh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YH65_08305
DNA replication proteins [BR:
slh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YH65_08305
DNA repair and recombination proteins [BR:
slh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YH65_08305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MoCF_biosynth
Motif
Other DBs
NCBI-ProteinID:
AKF25389
UniProt:
A0A7U4M1Y5
LinkDB
All DBs
Position
complement(1685748..1689314)
Genome browser
AA seq
1188 aa
AA seq
DB search
MSEEPKSKPQFTHLHLHTEYSLLDGANKIKALAKKVKELGMTSVAMTDHGNMFGTIDFYN
TMRKEGIKPIIGMEAYVHNQPELGDKSVRQRFHLCLYAKNEAGYKNLMFLSSKAYIEGFY
YYPRINWDLLKDHAEGLVCSSACLQGEVNWHLNLSERNLKFGAKGYEEAKRIALKYKEVF
GDDFYLELMRHGIGDQHRIDKQILQLSQETGIKIVATNDTHYTNPQDADAHEAFMCIAMN
KLYDDPNRLRHSVHEFYVKSPEQMAELFADIPEALEATQEIADKCNLEIKLGNPTPPNFK
FAREKADEIGLELPEPEVEYSLENDKTLFIEESKRGLAERLKIVPEEKHQEYWHRLQVEI
DIINNMKFPGYMLIVWEFVDAAKRMGIPVGPGRGSAAGSLVAYALRITDIDPMPYGLLFE
RFLNPERISMPDIDMDFCQARRQEILDYVVEKYGRVNVAQIITFGKLLAKGVIRDVARVL
DMPYSKADAMAKLIPDELGIDLKASYEKEPKIKELLESDPQAKRTWEYALALEGLNRNAG
THAAGVVISNEALWQKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLGLKTLTVIEEAL
QLVEKRHGKRINFVEENIEDPKVYDYISTGETLGLFQIESAGMQDLAKKLKPSGFEDIIA
MLALYRPGPMESGMLDDFVERKHGRAEITYAFPELEPILKPTYGVIVYQEQVMQIVQTIG
GFSLGGADLVRRAMGKKIKEEMDKLKDEFADGAAKKGFDRAKAADLFDLIVKFAGYGFNK
SHSAAYAMVTFYTSYLKYYYPTEFMAAILTLEKNNTDKVVKYVDELKQMGIKLLPPDINR
SGLVFEATNIDGDEVVMFGMGAVKGAGDIAINSMLKAREEGKFSDFSDFVSRIDSSKVNK
KVIESLIKAGALDSFGYSRKAMLSQIEDIIDTAKKAGEAKKMAVGSLFGEGQEMTSVTLE
LSHMEEFEPMEILEMEKESLGFYVSGHPLDKYRETLEGINYTLSSEIDDLADGSQALFIG
KIESITEKISKKGNKFGIANIMDLHGNIELMLFENRLKELDEGFDTTKPIAFKVKISKDG
DFTRMNIIKIESLKDAKKEKVKVKKEEKHTLEPEQPPLILALNLMPDAKTVEDLMCLVER
YPGKRPLELRIKSKLADVIIESKWKVSEMILGEAKELGAYLEENLSVE
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaccaaaaagcaaaccgcaattcacccatcttcatcttcatacggagtat
tcactgcttgacggcgccaacaagatcaaagccctggcaaaaaaggtcaaagagttggga
atgacgtcggtagcgatgaccgaccacggaaatatgttcggtactatcgatttctacaat
accatgcgaaaagaaggtatcaagccgatcatcggtatggaagcctatgtacacaatcag
cctgaactgggagacaagtcggttcgacagcgtttccacctctgtttgtatgcaaaaaat
gaagcagggtacaagaatctgatgttcctcagctccaaagcttacatcgaggggttctat
tattatccgcgtattaactgggatctgctcaaagatcatgcggaagggcttgtctgttct
tctgcctgtcttcagggggaagtgaactggcatctcaacctttctgagcgcaatctcaag
ttcggtgccaaagggtacgaggaggccaaacgtattgctctgaaatacaaagaggttttc
ggggatgatttctaccttgaactgatgcgtcacggcattggggaccagcaccgtatagac
aagcagatccttcagctctcgcaggagacaggcattaaaatagttgcaacgaacgatacc
cactacaccaatcctcaggatgcggacgcgcatgaggcatttatgtgtatagcgatgaac
aaactctatgacgatcccaaccgtctgcgccactccgtacatgagttctatgtgaaatcc
cccgagcagatggccgaacttttcgccgatattcccgaagcattggaggcgacgcaggag
atcgcggacaagtgcaatcttgagatcaaactggggaacccgacaccgccgaatttcaag
ttcgccagagagaaggcagatgagattggactcgaactgccggaacctgaagtggagtat
tcgctggagaacgacaaaacgcttttcatcgaagagtcgaaaagaggattggccgaacgt
ttgaagatcgttcccgaagagaagcatcaggagtactggcaccgtctgcaggtagagata
gacatcatcaacaatatgaagttccccggctatatgctgatcgtatgggagttcgtcgat
gcggctaagcgtatggggatccccgtaggtcccggtcgtgggtccgcggcgggttcgctg
gtggcttatgcccttcgtattaccgatatcgaccccatgccttacggcctgctctttgag
cgatttttgaacccggaacgtatctccatgccggatatcgatatggacttctgtcaggcg
cgtcgtcaggagatacttgactacgtggtggaaaagtacggtcgtgtgaacgtggcgcag
atcattacctttggtaaactgcttgccaaaggggtcatccgtgatgtcgcacgtgtgctt
gacatgccatactccaaagcggatgcgatggcaaaactgatccccgatgaactggggatc
gacctgaaagcgtcatatgaaaaagaacccaagataaaggaattgcttgagagtgatccc
caggccaaacgtacctgggagtatgcactcgcactcgaagggctgaaccggaatgcgggt
acccatgctgccggtgttgttatctcgaacgaagcactttggcagaagacaccgcttttc
aagccttcggggcttgatacgctggcgacacagtattcggggaaatatgtggaagatgtt
gacctgattaagtttgactttttggggctcaaaacactcaccgtgatcgaagaggcactg
caactggtcgagaaaaggcacggtaagcgtatcaatttcgttgaagagaacatcgaggat
cccaaagtgtatgattacatttcaacgggtgagacgcttggcctcttccagatcgaatcg
gccggaatgcaggatctggcgaaaaaactgaaaccgtccggtttcgaagatattatcgcg
atgcttgcactttatcgtcccgggccgatggagtcgggaatgctcgatgacttcgtcgaa
cgtaaacacggccgggcagagattacctatgccttcccggaacttgaacctatccttaaa
ccgacctacggggtcattgtctaccaggaacaggtcatgcagatcgtgcagaccatcggc
ggtttctcactcggtggtgccgacctcgtgcgacgggcaatgggtaagaagatcaaagag
gagatggataaactcaaagacgagtttgccgacggtgctgccaagaaaggatttgacaga
gccaaagcggcggatcttttcgaccttatcgtgaaatttgccggctacggttttaacaaa
tcgcactcggctgcctatgcgatggtcaccttctatacctcctatttgaaatattattat
cctacagagttcatggcggccattctgactctggaaaagaataataccgacaaagtcgtc
aaatatgtagatgaactgaaacagatgggcatcaaactgctgccgcctgacatcaacagg
tccggactggtctttgaagcgacgaatatcgatggtgatgaggttgtcatgttcggtatg
ggtgcggtcaaaggtgccggggatattgctattaattccatgcttaaagctagagaagag
gggaaattcagcgacttctctgactttgtttcccgtattgattcgagcaaagtgaataaa
aaggtcatagaatcactcattaaagcaggggcgctggatagtttcggttacagccgtaaa
gcgatgctctcacagatagaagatatcattgatacggccaaaaaagccggagaggccaag
aaaatggctgtcggttccctttttggcgaagggcaggaaatgacttctgtcacccttgaa
ctctcccatatggaagaatttgaacctatggagatccttgagatggagaaggagtcactg
ggcttttatgtctctggtcacccgcttgacaagtaccgtgaaacgctggaaggtatcaac
tatacactcagttctgagattgatgatctggcagacggttcacaggcccttttcattgga
aaaatagaaagcattaccgagaagatatccaagaaagggaataagttcggaatcgcgaac
attatggacctgcatgggaacattgaactgatgctttttgagaaccgtctcaaagagctc
gatgaaggtttcgatacgaccaagccgatcgctttcaaggtcaagatcagcaaagatggt
gatttcacccgtatgaatatcatcaagatcgaatcgctcaaagatgccaagaaagagaaa
gtcaaggtcaaaaaagaggagaagcacacgctggaaccggaacagccgccgctgatcctg
gctttgaacctgatgcctgatgccaaaacggtggaggatctgatgtgccttgtggagcgt
tacccgggcaagcgtcctctggaactccgtatcaagtcaaagctggcagatgtgatcatc
gaatcaaaatggaaagtgagtgaaatgatccttggagaggcgaaggaactgggtgcctat
ctcgaagagaatttgagtgttgaataa
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