Spirosoma linguale: Slin_0035
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Entry
Slin_0035 CDS
T01156
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sli
Spirosoma linguale
Pathway
sli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slin_0035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sli03019
]
Slin_0035
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_0035
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slin_0035
Messenger RNA biogenesis [BR:
sli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Slin_0035
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Slin_0035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
MarR_2
HEM4
Motif
Other DBs
NCBI-GeneID:
8723763
NCBI-ProteinID:
ADB36109
UniProt:
D2QBC7
LinkDB
All DBs
Position
complement(41332..43455)
Genome browser
AA seq
707 aa
AA seq
DB search
MTVSTAHTQQPADYLKRYYGYDRFRPMQEAIIQSILSGRDTVVLMPTGGGKSVCFQIPAL
MLPGLTVVVSPLIALMKDQVGALHMNGIQAAFYNSTQTSREQREIENDCISGKLKLLYVS
PEKLLTESFFQFLSLTNLSLFAIDEAHCISSWGHDFRPEYTQLHVLKEQFPTVPTIALTA
TADKLTRQDIATRLGMNDPAIFVDSFNRKNLSLQVLPGQNRIQQIIRLLQQKPDTSGIIY
CLSRKSTESLAAKLQEKGFSAAFYHAKMDPDDRSKTQEAFLRDDVRIICATIAFGMGIDK
SNVRWVIHYNMPKNIESFYQEIGRAGRDGAAAQTVLFYSFADVATYKDMLAENNPANLGL
QLAKLERMQQYADAHTCRRQILLSYFSEELPDPCGNCDVCRDPRVTFDGTVLAQKALSAI
IRTGERVPMNLLIDILRGSRSQQVLQGGYDQIKTYGAGRDIRFEDWRSYIHQLINIGVIE
IAYEQHYALRRGILADQVLYKGRKIDLVRPDDAPKPVVEKTRAKTETQRDDLFERLRVLR
KQLADEQNVPAYVIFTDTTLEDMARQRPTAPDALRNVSGVGERKLQLFGKRFLEEIVGHV
RGRVEAGEKPKGSTQLITLDLYNDGLTIEEIAARRQLTTGSVAGHLVQLAKAGYDIDLVS
LVDPFERREIEKAIGVVGMEEGRLKPVFDYLEGRYDYGKLTLVAGLL
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtttcaacagcccatacccagcagcccgccgattacctcaaacgctattatggt
tacgaccgcttccggcccatgcaggaagccatcatccagtcgatcctgagtggtcgtgac
acggtagtactgatgcctacgggaggtggcaagtcggtctgtttccagattccggccctg
atgctgccgggtctgacggtggtggtttcgcccctgatcgccctcatgaaagaccaggtg
ggtgcgctgcatatgaacggtattcaggccgctttttacaacagcacccaaaccagccgg
gaacagcgcgaaatcgaaaacgactgcattagcggcaagctcaaactcctctatgtttcg
cccgagaagctgctcaccgaatcgtttttccaattcctgagcctgactaacctgtcgctg
ttcgccattgacgaagcgcactgtatttcctcctgggggcacgacttccggccagaatac
acccaactgcacgttctgaaagagcagtttccaacagtgccaaccattgccctgacggca
accgccgacaaacttacccggcaggacattgccacccggctcggcatgaacgacccggct
atttttgtggactcctttaaccgcaaaaacctgagcttgcaggtgctgccgggccagaac
cgcatccagcagattatccggctgcttcagcagaaacccgacacctcgggaattatttac
tgcctcagccggaaatcgaccgaatctttggcagccaagttgcaggaaaaaggatttagt
gcggctttttaccacgccaaaatggaccccgacgaccgctccaaaacccaggaggccttc
ctgcgcgacgacgttcggattatatgcgccaccattgccttcgggatggggatcgacaaa
tcgaacgtgcggtgggttattcattataacatgcccaagaacatcgaaagcttttatcag
gaaatcgggcgggccggtcgggatggcgcggctgcccaaaccgtcctgttttacagcttt
gccgatgtagcaacgtataaggacatgctggccgaaaacaacccggccaacctcggcttg
cagctggctaagctggaacgaatgcagcagtacgccgatgcacatacctgccgccgacaa
attctgctgtcttacttctcggaagaactgcccgacccctgtggcaactgcgacgtttgc
cgcgacccgcgcgttaccttcgatggcaccgttctggcccagaaagccctttcggccatc
atccgcacgggcgaacgggttccgatgaacctgctgatcgacatcctgcgcggctcccgc
agccagcaggtgctgcaaggtggctacgaccagataaaaacctacggggcaggccgcgat
attcggttcgaagactggcggagctacatccaccagctcattaatatcggcgttatcgag
attgcctacgaacagcattacgcccttcggcgcggtatcctggccgatcaggtattgtat
aaaggacgaaaaattgacctcgtccgcccggatgatgcgcccaaaccggtggttgagaaa
acgcgggcgaagaccgaaacccagcgcgacgacctcttcgaacggcttcgggtactgcgc
aagcaactcgccgacgagcagaacgttccggcttatgttattttcacggataccacgctc
gaagacatggcccggcagcgccccaccgcccccgacgccctgcggaatgtgagtggtgtt
ggcgagcggaaactgcaactcttcggcaagcgctttctggaggaaattgtcgggcatgta
cgcggccgggtggaggctggtgaaaagccgaaaggatcgacccagctcattaccctcgat
ttgtataacgacggcctcaccatcgaagaaattgctgcccgtcgacagctcacaacgggg
tctgtggcggggcatttggttcagttggcgaaggccggatacgatattgatttagtctcg
ctcgtcgacccttttgaacggcgcgaaatagagaaggcaattggggttgtgggtatggaa
gaaggccgtttaaagcccgtattcgactatttggaaggtcgatacgattacggcaaacta
acgctggtcgccgggcttttatag
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