Spirosoma linguale: Slin_0531
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Entry
Slin_0531 CDS
T01156
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sli
Spirosoma linguale
Pathway
sli03030
DNA replication
sli03430
Mismatch repair
sli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Slin_0531
03430 Mismatch repair
Slin_0531
03440 Homologous recombination
Slin_0531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sli03032
]
Slin_0531
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_0531
Enzymes [BR:
sli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Slin_0531
DNA replication proteins [BR:
sli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Slin_0531
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Slin_0531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Isochorismatase
DUF6282
T2SSK
Motif
Other DBs
NCBI-GeneID:
8724259
NCBI-ProteinID:
ADB36595
UniProt:
D2QFB8
LinkDB
All DBs
Position
complement(651447..655064)
Genome browser
AA seq
1205 aa
AA seq
DB search
MQFSHLHCHTQYSLLDGQADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAEASKQGIK
PIVGCEFYVVEDHHKKQFTKEQKDVRYHQLLLAKNAQGYKNLAKLCSLGYMEGLYGKYPR
VTKELIDQYKEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGEDYYVELQRHEI
PDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQSTPSMKDFSD
DDVMPKNTRFAFFSDQFYFKNTQEMTTLFKDLPEAIDNTNEIVGKVETLKLKRDIMLPNF
PIPKEFQQHTDDVLNQWEYLRHLTYEGAKERYVDILPHIQERLDFELFTIRTMGFAGYFL
IVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYDLLFERFLNPDRKSMPDI
DTDFDDEGRQKVIDYVVQKYGKAQVAQIVTYGTMASKSSIKDVARVMDLPLQDANAVVKL
VPDKPTYNMTLKRIFEDPIDGPGGLSSVIQPDEVENVKRMRALEAGDKSAAQAMRIVDFE
KVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSKDTNLIITQYEGKVIEDA
GVIKMDFLGLRNLTIIKECLRLIKQNHDVTIAIDDIPLDDEETYKLFQRGETNAVFQFES
DGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGREEVKYDMPEMEEYLADT
YGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKMKGKFMDGCAANNLPLKV
CEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYMAAVLTSCLGTIDKITFF
MEECKNLGLPLLGPDVNESERFFGVNKKGEIRFGLGGIKGAGDAAVEAIIEERKAGGPYK
DIFDFAVRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMAEGDTSPFLDKVIRYANN
YHAEKAAAQQSLFGAMMNGEPMIARPKPPIVTEWNQIEKLKYEKDVVGFYITGHPLDEFK
LELDGFCNCTLDKIYETRQPEIKVAGIVSSMQTKIAKNGNPFCIFKIEDYNTSIELALFG
EDYVRMGQYIEVGRFLHITGKTQNRWNSENLEFKATNIRLLTEMREKFCKELRVSLTIDS
LNAQVVAKINELVNAHPGTCTLSLNVVDPSERIEISLQARTLKVSPANTLLRSLEAMDGV
TCKVA
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcacatcttcactgccatactcaatactcgctgctcgatggtcaggccgac
attaagaagctgattaagaaggctaaagccgataatatgccggccgttgccatcaccgat
cacggcaatatgttcggggtatttgaatttgtagccgaagccagtaaacaaggcatcaag
cccattgttggctgcgagttctatgtcgtggaagatcaccacaagaaacagtttaccaaa
gagcagaaagacgttcggtaccatcagctgttactggcgaagaacgcgcagggctacaaa
aacctggcgaaactctgctcgctgggctacatggagggattatacggcaaatatccccgc
gttacgaaagagctgatcgaccagtataaagaaggacttattgcctctacctgctgcatt
ggcgcatcggttcccaaaacgattctcaaaaaaggcgaagaagccggtgaaattgagttc
aaatggtggctcgaccgtttcggtgaggattattacgttgaactgcaacgccacgaaatt
cccgaccagatcaaagccaacgaggtattgatcaagttcgcccggaagtacaacgtcaag
atcattgcgtccaacgattcgcactatgtcgatcaggacgactgggttgcccacgacatt
ctgctgtgcgtaaacaccaacgaaaagcagagcacaccgtcgatgaaggacttcagcgac
gacgatgtgatgcctaagaatacccgctttgcgttcttcagcgaccagttctatttcaag
aacacgcaggagatgacgacgcttttcaaagacctgcccgaagccatcgacaataccaac
gagattgtcggcaaggtcgaaacgctgaagctcaagcgcgacatcatgttgcctaacttc
ccgattccgaaggagttccagcagcataccgacgacgtactgaaccagtgggaatacctg
cgtcacctgacgtacgaaggggccaaagaacggtacgtcgatattctgccacatatccag
gaacgccttgattttgaactgttcacgatcaggacaatgggatttgccgggtacttcctc
atcgtggccgacttcatcaaagccgggcgcgacctgggcgtgatgatcgggccgggacgg
ggctcggctgccggtagtgcggtggcgtactgcaccggtatcaccaatatcgaccccatc
aagtacgacctgctgttcgagcgttttcttaaccccgaccggaagtcgatgcccgatatc
gatacggacttcgacgatgaaggccgtcagaaggtaatcgactacgtggtgcagaaatac
ggaaaagcgcaggtggcgcagatcgtgacctacggtaccatggcctccaaatcgtccatc
aaagacgtagcgcgggtgatggatttacccttgcaggatgccaacgccgtagtgaagctc
gtgcccgacaagccgacctacaacatgacgctcaagcgcatcttcgaggaccccatcgac
gggccgggcgggctttccagtgttattcagcccgacgaggtggaaaacgtgaagcgaatg
cgggcgctggaagctggcgacaagagtgcggctcaggccatgcgcatagtggattttgaa
aaggtatcggcggtactcaaacaggcgcgtaaactcgaaggcacggtccggaatacaggc
ttacacgcggccggaatcatcattgcgcccagcgacctgtcggacattgtgcccgtgtcg
acctcaaaagatacgaacctcattattacccagtatgagggtaaagtgattgaagatgcg
ggcgttatcaagatggactttttggggttgcgcaacctcaccatcattaaggaatgtctg
cggctcatcaagcagaaccacgatgttaccattgccatcgacgatattcccctggacgac
gaagagacctataagctcttccagcggggtgaaaccaacgccgtgttccagtttgaatcc
gacggcatgaaaaagcacatgaaggacctgaagcctgaccgcttcggtgacctcattgct
atgaacgccctctaccgacccggcccgattgcctacattccgaactacatcaaccggaaa
cacggccgcgaagaagtcaaatacgacatgccggaaatggaggagtatctggcggatacg
tacggcattaccgtgtaccaggagcagttgatgctgctgtcgcagaagctgggcaacttc
accaagggcgacgccgacgtactgcggaaggcgatgggtaagaaagacaaggctacgctc
gacaagatgaagggtaagtttatggatggctgtgccgccaacaacctgccgctgaaagtc
tgcgagaaagtctggaccgactgggaagcctttgcttcgtacgccttcaacaagtcgcac
tcgacctgctacgcgtttgtggcctatcagacggcctacctcaaagcgcactacacctcg
gagtacatggcggccgttttgacaagctgtctgggtacgattgataagattacattcttc
atggaagagtgtaaaaaccttggtttgcccctgctgggaccggatgtcaacgagtcggag
cggttcttcggcgtgaacaagaagggcgaaatccgctttggattgggcggtatcaaaggt
gcaggcgatgcggccgtcgaagccatcatcgaagagcgtaaagccggtggcccttacaaa
gatattttcgattttgccgtgcgggtcaacctccggacggttaacaaaaaaacctgggaa
tcgctggcttacgcgggtgcgttcgactccatcgacgagtaccaccgggcgcagtatttc
gagatggcggagggagacacctcgccgtttctggacaaggttatccgctacgctaacaac
taccatgcggagaaagccgcagcccagcagtcgttgtttggggccatgatgaatggcgag
cccatgattgcccggcccaaaccacctatcgtaacggagtggaaccagattgagaagctg
aaatacgagaaggatgtagtgggtttttacatcaccggccacccgctcgatgagtttaaa
ctggagctggacggcttctgcaactgcacgctggataagatttatgagacccgccagccc
gaaataaaagtggccggtatcgtttcgtccatgcaaaccaagatcgccaagaatggtaac
ccgttctgtatcttcaaaattgaagactacaacacgtccatcgaactggcgctgtttggg
gaggattatgtccggatgggccagtacattgaggtaggccgattcctgcacattacgggc
aagacccagaatcggtggaactccgagaatctggaattcaaggccacgaacatccgctta
ctgaccgagatgcgggagaaattctgcaaagagctgcgtgtctcgctaaccatcgactca
ctcaatgcccaggtcgtagctaaaattaacgaactggtcaacgcccaccccggcacctgt
acgctatcgctcaacgttgtcgaccccagtgaacgtatcgaaatcagtttacaggcacgc
acgctgaaggtatcgcccgccaacaccctgctcaggtcactggaagccatggacggcgtg
acgtgtaaggtggcgtaa
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