Spirosoma linguale: Slin_2449
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Entry
Slin_2449 CDS
T01156
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sli
Spirosoma linguale
Pathway
sli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slin_2449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sli03019
]
Slin_2449
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Slin_2449
Messenger RNA biogenesis [BR:
sli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Slin_2449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
DUF530
Motif
Other DBs
NCBI-GeneID:
8726193
NCBI-ProteinID:
ADB38469
UniProt:
D2QGG1
LinkDB
All DBs
Position
2952331..2953788
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AA seq
485 aa
AA seq
DB search
MQFSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL
QLLSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQV
NTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPT
HRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHI
LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRD
IHKLIGKRVPVIDNHPYVLDIATATVTPAPARQGQGRGGNGGNRNGGGRSGGSGSFNRNG
NNNNSRRADNSGPARSTDQRSSSSDGSYRRDENSAPKRPSSRPSQPQSRGTGNSRFSNSS
SDKNY
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttccgaattatcattaattgaccctatcctgaaggccctaaccgaagaagga
tacaccaacccgacacccatccaggaaaaagccataccaatcttgttaagccgccgggac
ctattaggctgcgcccaaaccggaactggtaaaacagccgcttttgccatccctatttta
caactgctaagcgaagaacggagcaaaagtactggcggtccacgccggatcaaaaccctc
attctaacccccacccgcgagttagccattcagatcgccgaaagctttacagcctatggc
cgtcacctgaacatccgtaatacggttatttttggtggtgtttcgcaacattcgcaggtg
aacacgctcaaagcgggtgttgatgtgctgattgctacccccggccgtttgctcgatctc
atgaaccagggctttatatcgcttcgggatgtacagttctttgtccttgacgaagccgac
cggatgctggatatgggctttatccatgacgttaagaaagtcatcaccaaattgcctacg
catcggcagtcgctgtttttctcagcaacgatgccccccgatgttgccaagctagctgat
acgatcttaaataaccccgccaaagtagaagtaacacccgtatcctctacggccgatact
attgaacaggctatgtattttgtcggaaaagaagataagcgtaaactgcttgttcatatc
ctcgacgataaaaacatcaaatctgcgctggttttcgcccgtaccaaacatggtgccgac
aaagtcgtaaaagacttgctgaaggcgggtatcggtgctgaagccatccatggcaacaag
tcgcaaaatgcccgccagcgtgccctctcgaacttcaaaagccgggaaacgcgggtgctg
gttgcaaccgatattgccgctcgtggtatcgacgtcgacgaactgtcgcacgtgatcaac
tacgaactgcctaatattccggaaacgtacgttcaccggattggccggacgggccgtgca
ggccatgatgggattgccctgtcgttctgcgacgccgaagaaactgagtatctgcgcgac
atccataagctgattggcaaacgggttccggtaattgacaaccatccttacgtactcgac
attgctacggcaaccgttactccggctcctgcccgacagggacaaggtcggggtggcaac
ggcggcaatcggaacgggggtggtcgttcgggcggttccggttcgttcaatcggaacggg
aacaacaataacagccgtcgggcagataacagcggaccagcccgctcaacagaccaacgg
tcttcgtcttcggacggttcttaccgtcgggatgaaaacagtgcaccgaaacgacccagc
agtcgtccgtcgcagccccaaagccggggcactggcaacagtcgctttagtaactccagt
tctgataaaaattattaa
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