Spirosoma linguale: Slin_3330
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Entry
Slin_3330 CDS
T01156
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sli
Spirosoma linguale
Pathway
sli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Slin_3330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sli03019
]
Slin_3330
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Slin_3330
Messenger RNA biogenesis [BR:
sli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Slin_3330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
DUF2560
Motif
Other DBs
NCBI-GeneID:
8727083
NCBI-ProteinID:
ADB39340
UniProt:
D2QNF1
LinkDB
All DBs
Position
complement(4027184..4028527)
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AA seq
447 aa
AA seq
DB search
MTFDELNLNKPLLNALNDLGYTTPTTIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPTL
RQMQFSKDRQPQLLIIVPTRELVVQVVDAVKKLTTYMNLTVVGVYGGVNMKAQTVEIMQG
LDVLVATPGRLADFMLGGTLKTKGIKKLVIDEFDEMLNLGFRAQLKVVLDLLPPKRQNLL
FSATLTDDVDQLVNDYFNKPVRVEAAPMGTPLEKIDQSGYRVPNFYTKINLLTLLLNRNA
AMTKVLVFVATKQLADQLFEQLESGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYRILIAT
DIIARGIDVTDVSHVVNFDLPDLPENYIHRIGRTGRADREGIAVSFITESAREAQEAIEQ
LMNQPIPMLPLPENLVISDELTDDEKPKVHMKFIDVKPPKREDVGPAFHEKSAKNQKVNV
RRNIAEEKMLKYGRPIKRVGGKKKRDK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgacgaactgaatctgaacaaaccccttctgaacgccctcaacgatttgggg
tacaccacgccgacaaccattcagcaaaaggtattttcggtcgtgatgtcggggcaggat
gtgtgcggcatcgcgcagacgggaaccgggaaaacgtttgcctatctgttgcctacgctt
cgccagatgcagttttcgaaggacagacagccgcagttgctgatcatcgttcccacccgc
gaactcgtggtgcaggtggtcgacgcggttaaaaagctgacgacgtatatgaacctgacc
gtggttggcgtatacgggggcgtaaacatgaaggcgcaaacggtcgagattatgcagggg
ctggatgtgctggtggcaacccccggtcggctggccgatttcatgctgggcggtaccttg
aaaacgaaagggatcaagaaactcgtcatcgacgaattcgacgaaatgctcaaccttggc
tttcgggctcagttgaaagtggtgctcgacttactgccgcccaaacggcaaaacctgctg
ttctcggccacgctcacggacgatgtcgatcaactggtgaatgactacttcaacaaaccc
gttcgggtcgaagcggctccgatgggtactccgctggaaaaaatcgaccagtcgggctac
cgggtacctaacttttacaccaagatcaacctgctcacgctgctcctgaaccggaatgcg
gccatgaccaaagtgctggtctttgtggccaccaagcaactcgccgaccaactgttcgag
caactggaatcgggttttccggatcaggtgggggttattcattccaataaagcgcagaac
aaacgattcgaggccgtcaataacttcaaagccgggacctaccggattctgattgcgacg
gatatcattgcccgtggtatcgacgtgaccgacgtgtcgcatgtggtcaatttcgacttg
cccgacctacccgaaaactacattcaccgcattggccgaaccggccgggccgaccgcgaa
ggaatcgccgtttcctttattaccgaaagtgcccgtgaagctcaggaagccatcgagcaa
ctgatgaatcagccgatcccgatgcttcctctgcccgagaacctggtcatttcggacgag
ctaaccgacgacgagaagccgaaggtgcatatgaagttcatcgacgtcaagccacccaaa
cgggaagacgttggccccgcttttcatgagaaaagtgccaagaaccagaaggtgaacgtc
cgacggaatattgcagaggaaaaaatgcttaagtacggccgacccatcaagcgggtagga
gggaagaagaagcgggataagtag
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