Spirosoma linguale: Slin_3380
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Entry
Slin_3380 CDS
T01156
Name
(GenBank) ATPase AAA
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sli
Spirosoma linguale
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sli03009
]
Slin_3380
03012 Translation factors [BR:
sli03012
]
Slin_3380
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Slin_3380
5.6.2.5 RNA 5'-3' helicase
Slin_3380
Ribosome biogenesis [BR:
sli03009
]
Eukaryotic type
Other ribosome biogenesis factors
Slin_3380
Translation factors [BR:
sli03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Slin_3380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
ResIII
SLFN-g3_helicase
Helicase_RecD
AAA_22
PhoH
DEAD
UvrD_C_2
UvrD_C
AAA_16
UvrD-helicase
nSTAND3
T2SSE
Herpes_ori_bp
AAA_14
AAA_24
OmpH
DAP3
AAA_5
ATPase_2
SRP54
AAA_25
NPHP3_N
AAA
SNF2-rel_dom
HEM4
cobW
AAA_7
ADDB_N
Flavi_DEAD
NTPase_1
Motif
Other DBs
NCBI-GeneID:
8727133
NCBI-ProteinID:
ADB39388
UniProt:
D2QP80
LinkDB
All DBs
Position
4083557..4085455
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AA seq
632 aa
AA seq
DB search
MDYFKNLLDLLKVEREEDRTQYRKLTETTSIAERRANGLTWYPIAIRGSEMSRGDYVSVE
VERTTHQDIPHQLRFGMPAVLFSNHDPRTDRVEGTISHQSGNRLRITLRVDELPDWSRDG
KLGVEVLFDDNSYDEMEAALKLANSLAEKSDNRLINVLTGSTSPTFHPDTPPLSLPRLNP
SQVAAVGKILTANELAIVHGPPGTGKTTTLVQAIKALHKQDNKKLLVVAPSNTAVDLLSE
KLHDEGLSVLRVGNPARVSERLMALTLDHKVADHPAMKEARKLKKQANEFKNMAHKYKRN
FGKAERDQRKALFDEAHRIMKEVGNTEQYVIDDLVGKAQVITATLVGANHYTVRNLTYHT
VVIDEAGQALEPACWIPILKAQKVVLAGDHCQLSPTIKSAEAARKGLSHTLLEKCIKLHP
EAVSLLDEQYRMHEHIMGYSSQVFYKNKLKAHGSVARHSLFDSDTALVFVDTAGCGFDEK
LDGTSSTNPEEAALLMKHLTQLVTDLSTRYTKENFPTIAIISPYKQQINVLKDQLLHTPE
LQPYSDRISVNTIDSFQGQERDIVYISMTRSNAEGEIGFLSDIRRMNVAMTRARKKLVIV
GDSATLAGLPFYADFIAYAEQLNAYQSAWEFM
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggattatttcaaaaatctgcttgatttactaaaggttgaacgagaagaagaccgtacc
caataccgcaaactcaccgaaacaacttctattgccgagcgtcgggccaatggcttgacc
tggtaccccattgccatccggggttccgaaatgagccggggcgattatgtatccgtagaa
gtcgagcggaccacccaccaggatattccgcaccagttgcggtttggtatgcccgccgtg
ctgttcagcaaccacgaccccaggactgatcgtgtggaaggtacgatctcccaccagagc
ggcaaccgcctgcgaataaccctgcgcgtggacgaactgcccgactggtcgagggatggc
aaactgggcgttgaagtactctttgacgacaacagttacgatgagatggaagcggccctc
aaactggccaattccctcgccgagaaatctgacaatcgcctgatcaacgtactgacgggc
tccacatcgccgacctttcaccccgatacgccacccttatcgcttccccggctgaacccc
agccaggtagccgccgtgggcaaaatattgacggctaacgaactggccattgtacatggc
cctcccggcacgggcaaaaccaccacgctggtgcaggccataaaagccctgcataaacag
gataacaagaagctgctggtcgttgcgcccagcaatacagctgtcgacttactgagtgaa
aagctgcatgacgaagggctgagcgtgcttcgagtgggtaatccggcccgcgtatcggag
cgattgatggcccttacgctcgatcataaagtggccgaccacccggccatgaaagaggcc
aggaagctaaagaagcaggccaacgagttcaagaacatggcgcataaatacaagcgaaac
ttcggtaaagcggagcgtgaccagcgtaaagccctgttcgacgaggcccatcggattatg
aaggaggtgggcaatacggagcagtacgtcatcgatgatctggtaggaaaagcgcaggtg
attacggcaacgctggtaggtgccaatcattacacagtccgtaacctcacgtatcatacg
gtggtcatcgacgaagccggtcaggcattggaaccggcttgctggattcccattctcaaa
gcacagaaagtggtgctggccggtgatcattgtcagctttcgcccactatcaaatcggct
gaagctgcccgcaaggggttgagccataccctgctcgaaaaatgcattaagttgcatcct
gaggccgtttctctgctggacgaacaataccggatgcacgaacacatcatggggtattcg
tcgcaggtgttttataagaacaagctgaaagcgcacggctcggtagcgcggcactcgtta
ttcgacagcgatacggctttggtgtttgtggatacggccgggtgcggtttcgatgagaaa
ctggatggcaccagttcaaccaatcccgaagaagccgccctgctgatgaaacacctaacc
caactggtcacggacctgagtacgcgctacacgaaagagaatttcccgactatcgccatt
atctcgccctacaagcagcagataaacgtactaaaagaccagttgctgcacacacccgaa
ttacagccttacagcgaccggatttcggttaacaccatcgacagttttcaggggcaggag
cgcgacatcgtgtacatctccatgacccgcagcaatgccgaaggggaaattggtttcctg
tccgacattcgccggatgaacgtcgccatgacccgcgcccgcaagaaactggtcatcgtt
ggcgacagtgcaacgctggcggggcttcctttctacgcggatttcatcgcctacgctgag
caattgaacgcttaccaaagcgcctgggagtttatgtga
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