Spirosoma linguale: Slin_4062
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Entry
Slin_4062 CDS
T01156
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sli
Spirosoma linguale
Pathway
sli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Slin_4062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_4062
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slin_4062
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Slin_4062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_3primeBD
ResIII
PriA_C
Helicase_C
Zn_ribbon_PriA
nSTAND3
AAA_30
DUF3638
Zn_Ribbon_TF
IstB_IS21
TsaE
Zn_ribbon_6
Motif
Other DBs
NCBI-GeneID:
8727820
NCBI-ProteinID:
ADB40049
UniProt:
D2QJK3
LinkDB
All DBs
Position
4886727..4889141
Genome browser
AA seq
804 aa
AA seq
DB search
MADGLKIGARVIVPFGKKNGRVFTAIVAKLHNTPPTGYQARYINETLDEYPLTTSYQLEL
FRWIADYYMCCIGEVMNVALPSGLKISSQSKVQFNPDFSYPELLTELEETLLTELKKHPA
LSYDEVGRLAGDGVNVAALIKSLVEKKAIIVFEEVREKYTPKMVRKIRLHRNYEKREQLL
VLLQRLEKLPKQQEVVMRYLSHVPLQRTPALNEKGLDKTILNQDDELSQSSLATLLKNQV
FETFDVIQPRFSDNGSPDGLQTEIKLTDAQRTASNQIMAQFDQHNVVLLHGITGSGKTEV
YIDLIQQALGSGSQVLYLLPEIALTTQIVVRLQRVFGDKMGIYHSKFSDNERVEVWKGVV
SGQYQFVVGVRSAVFLPFDNLGLIIVDEEHETSYKQHDPAPRYHARDVAIMLAHWQQAKV
LLGSATPSLETYYQAKQGRYGLVELFQRFGDATLPNIMLVNMQQEKKQKTLRNEFSSVLL
GALEANMERKEQSILFQNRRGYSPYMQCEDCDWTAECPNCAVSLTYHQRDAELRCHYCGH
KEGVPRMCPTCGSTKVKTIGFGTEKLEDQLQIFFPQSRVLRMDLDTTRAKNAYQQIIQEF
EGGQVDILVGTQMITKGLDFDNVSLVGIFDADRLIHFPDFRATERAFQMITQVSGRAGRR
AGRQGTVLIQTSNPQQPILQKVIDNDYKGLFTEELQERQDFNYPPFSRLIKLTVRHTDRA
ISHQAAERLAAELVDALGSSRVLGPEEPLVERIRNQFLFDILIKIERDKVNIKAVKTYIQ
DRINDILTDKGLRQVSIVADVDCL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgggctcaaaattggtgccagagttatcgtgccattcggcaaaaaaaacggc
agagtctttactgccatcgtggcaaagctgcataatacccccccaaccggctatcaggca
cgttacatcaatgagaccctggatgagtaccctttaaccacaagttaccagctagaactt
tttagatggattgcagactattacatgtgctgcatcggtgaggtcatgaatgtggcgctt
ccatcaggattaaagatttccagtcagtccaaagtgcagttcaatcccgatttcagctac
cccgaactgctcaccgaattggaggaaaccctgcttaccgaactcaaaaaacacccggct
ttatcatacgatgaagtggggcgcctggctggcgacggggttaatgtagcggctctgatt
aaatcgctggtcgaaaaaaaggccattatcgtctttgaagaagtccgggaaaaatacaca
cctaaaatggtacggaagattcgtcttcaccggaattacgagaagcgcgaacaactgctt
gttttgctgcaacggctcgaaaaactgcccaaacagcaggaagtcgttatgcggtacctg
agccatgttcccctacaacggacaccggccttgaatgaaaaggggcttgacaaaaccatt
ctgaaccaggacgatgagctatcacaatcgtcgctggccacgctgctcaaaaatcaggtt
ttcgaaacattcgatgttatccagccccgcttttcggacaatgggtcgcccgatggttta
caaaccgagatcaagctaaccgatgcccagcggacggcttcgaaccagatcatggcgcag
ttcgaccagcataacgttgttcttctgcacggcatcaccggcagtggtaagacggaagtc
tatattgatctaattcagcaggcccttggcagtggctctcaggtgctctatctcctcccc
gaaattgcccttaccacccagatcgttgtgcgtctacaacgggtatttggggataaaatg
gggatttatcactccaaattttcggataacgaacgtgtggaggtctggaaaggggttgtt
tcgggacagtatcagttcgtggtgggtgtgcgctcagcagtgtttttgccgttcgataac
ctggggctgatcatcgtggatgaagagcacgaaaccagctataaacaacacgatccagct
ccacgctaccatgcccgcgatgtagccattatgctggcgcactggcagcaggccaaggta
ttgctgggttcggccacgccctcgctcgaaacgtattatcaggccaaacagggtcgatac
ggactggtggaattatttcaacgctttggcgatgctaccctgcccaacatcatgctggtg
aacatgcagcaggagaaaaagcagaagacgctgagaaatgagttctcgtcggtgttgctg
ggggctcttgaagccaacatggagcgtaaagagcaaagtatcctgtttcaaaaccgccgg
gggtattcgccttacatgcaatgcgaagattgcgactggaccgccgagtgccccaactgc
gccgttagcttaacctaccaccagcgtgatgccgagttgcgctgccattattgtggtcat
aaagaaggagtgccgcgtatgtgccccacctgcgggtctaccaaggtgaagaccatcggc
tttggtacggaaaagctggaagatcaactccagattttctttccgcagtcgcgggtgctg
cgtatggacctggacactacccgcgctaaaaacgcctatcagcagatcattcaggagttt
gagggcgggcaggtcgatattctggtaggtacgcaaatgattaccaaagggctggacttc
gacaatgtcagcctcgtgggtattttcgacgccgaccggcttatccattttcctgatttc
cgggctaccgaacgagcgtttcagatgattacacaagtaagtggtcgggcggggcgacgg
gcggggcgtcagggaacggtattgatccagaccagcaatccacagcagccgatcctgcaa
aaagtaatcgacaacgactataaagggctgtttacggaggagcttcaggaacggcaggat
tttaattacccgcctttttcacggctcatcaagctaacggttcgccataccgaccgggct
attagccaccaggccgccgagcgactggccgccgagctggtcgacgcgctggggagcagc
cgggtgctggggcctgaagaaccgctggttgagcgaatccgaaaccagtttctgttcgat
attctaattaagatcgaacgcgacaaagtgaacataaaagccgtgaagacgtacattcag
gatcgcatcaacgacatcctcacggataaaggattacgtcaggtcagcatcgtagccgat
gtggattgtttgtga
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