Spirosoma linguale: Slin_4476
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Entry
Slin_4476 CDS
T01156
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sli
Spirosoma linguale
Pathway
sli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Slin_4476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sli03021
]
Slin_4476
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_4476
Enzymes [BR:
sli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Slin_4476
Transcription machinery [BR:
sli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Slin_4476
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Slin_4476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-GeneID:
8728236
NCBI-ProteinID:
ADB40456
UniProt:
D2QMP3
LinkDB
All DBs
Position
complement(5421235..5425584)
Genome browser
AA seq
1449 aa
AA seq
DB search
MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSSNQHLDD
KDPNKFIAKMGAEALEMLLSRVELDELSYSLRHAAATDTSQQRKAEALKRLKVVEAFREA
NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAVLEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEYPIP
GEGMTFYGTEEVVIGINEGKISKHANIKCRVKVRDENGQLVYKVIDTVAGRLLFNQAVPE
EVGYINELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFRGGLSIGLSDVMIP
EAKQGLVEEAKAEVQAVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQLEADQGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDCGTLRGLQVSALKDNEDI
VEPLSERILGRTTVHDIYDPLTKELIVASGELVTEEVAAHIDETSIETVEIRSVLTCESR
QGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNIAVDASIK
AKFDGLIEFEEMRTVQSEDNEGNAQTIVMGRSGEVRIVNPNDRSVVLISNNVPYGAFLRV
KDGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYREEFDEQTGFQEKVIIESR
DKAKNPAIIVQGTTTLTLHLPDNDGGPLQKSYNLPVGSRLVVKEGQKIKAGQPLAKIPRN
VGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGAIKRGNREIFIESRDGTKKKY
LVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKGPTAVQEYLVNEIQEVYRLQGVKI
NDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAFREENDKVLDAKVVMDAGDSPNVK
PGQIVTSRQLRDENSSLKRRDQALVTVRDAMAAVSQPTLMGITQSSLGTDSFISAASFQE
TTKVLSEASIRGKRDVLDGLKENVIVGHLIPAGTGLRRYQSAIVGSKEELETITESREQY
ARSKKKATV
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaaaaagaacaaaaagctcaacagcgactttgccagcgtgacgatcagtctg
gcatcgccggagtctattttggagagttcctacggcgaggtaacacagccggagacgatc
aactaccggacctacaaacccgaaatgggcggcttgttctgcgagcgcattttcgggcct
gtgaaggactgggaatgtcactgcggtaaatacaagcggattcgctacaaaggcattatc
tgcgatcgctgtggtgttgaagtaactgagaagaaagtacgccgggagcgtatgggccac
atcgaactggtggtgcccgttgcacacatctggtatttccgcagcttaccaaacaaaatt
ggttatctgctgggcctttcgaccaaaaaacttgaccaggttatctattacgaacgctat
gttgttgtacagcccggcgtaaaagcagaagatggtatcaaccagcttgacttcctgacg
gaagacgagtacctggatattattgacaaactgccaagcagtaaccagcatctggacgac
aaagacccgaataaattcatcgctaagatgggggctgaagcgctggagatgttgttgtcg
cgggttgagctggacgaactgtcttactcgctccgtcacgctgccgcaacggatacatcg
caacaacggaaagcagaagcgctgaaacgccttaaagtcgttgaagccttccgggaagcc
aatggccgtatcgagaaccgtcccgagtggatggtgatcaaaatggtaccggttattcca
cccgaactgcgcccgctcgtccccctggatggtggtcgtttcgctacgtcggatttgaat
gacctgtaccgtcgggttataattcggaacaaccgtctgaagcgtctgatcgaaatcaaa
gcgcccgaagtaattctccgtaacgaaaaacggatgttgcaggaagccgtcgattcgctg
ttcgacaactctcggaaagtaaacgccgttcgttcggaaggtaaccgtgccctgaagtcg
ctgtccgacatgctgaagggcaagcaaggccgtttccgtcaaaacctgctcggtaagcgt
gtcgactattctggtcgttcggttattgtggttggtcctgaactgaagctccacgaatgt
ggtctgccgaaagatatggctgccgaattgttcaagccgtttgttattcgcaaactgatt
gagcggggtatcgttaaaaccgtgaagtcggccaagaaaatcgttgaccggaaagatccc
gttatctgggacattctggaaaacgtattgaaaggtcaccctgttctgctgaaccgggct
ccaacgcttcaccgtctgggtatccaggcgttccagccgaagctgatcgagggtaaagct
atccagctgcacccactcgtttgtaccgccttcaacgctgactttgacggtgaccagatg
gccgttcacgtgccactgggccaggaagctgtgcttgaagcgtcgctgctgatgctggcg
tcgcacaacatcctgaaccctgccaacggtgcgccaatcacggtaccttcgcaggacatg
gtacttggtctgtactacgtgaccaaaggtcgcaagagcacccccgagtatccaattccg
ggtgaaggcatgaccttctacggtacggaagaagtggtaatcggtattaacgaaggtaaa
atttccaagcacgccaatatcaagtgccgggtgaaagtccgggatgaaaatggccagctt
gtttacaaagttattgacacggtagcgggtcggttgttgttcaaccaggctgttccggaa
gaagtgggttatatcaacgaactgctgaccaagaaaaagcttcagcagatcattgcgctc
atcttcaaaatttcgggtggtgcccgtacggctcagttccttgacgaaattaaagaactt
ggtttccagatggccttccggggtggtctgtcaatcggtttgagtgacgtcatgattccg
gaagccaaacaaggccttgttgaagaagcgaaagctgaagtacaggctgtttgggacaac
tacctgatgggtctgattacggagaacgaacgttacaaccaggttatcgatatctggacg
cgcgtgaactcccgtttgaccgaaacgctgatgaagcagcttgaagccgatcagggcgga
ttcaactcaatttacatgatgatgcactcgggagcccgtggttcgcgtgagcagattcgt
cagttgggtggtatgcggggtctgatggccaagccgcagaaaaacctgcaggggtcagtt
ggtgagatcatcgaaaacccgattctgtcgaacttcaaagaaggtctcgacgtattggag
tactttatctctacccacggtgcgcggaaaggtctggccgatacggctctgaaaacggcc
gatgccggttacctgacccgtcgtctgcacgacgtagcccaggatgttattattagcgaa
gacgattgtggtacgctccgcggtctgcaagtgtcggctctgaaagataacgaagatatt
gttgagccactgtctgagcgtattctgggccgtactacggttcacgatatttatgacccg
ctcacgaaagagctgatcgtagcatcgggtgagttagtgactgaagaagttgctgcccac
attgatgaaacaagcatcgaaacggtagaaatccgttcggtactgacctgcgaatcgcgt
cagggcgtttgcgccaagtgttatggccgcaacctggcatcgggacgcatggtcgacatc
ggtgaagcggtaggtgttattgcctcgcaatcgatcggtgagccgggtacgcagttaacg
cttcgtaccttccacgtgggtggtacggcatcgaacattgcggttgatgcctctatcaaa
gctaaattcgacggtctgatcgagtttgaagaaatgcggacggttcagtcggaagacaat
gaaggcaatgcgcaaacgatcgtaatgggtcgttcgggtgaagttcggattgtaaaccca
aatgaccggagcgtcgtacttatcagtaataacgtaccttatggtgccttcctgcgggtg
aaagacggtgacatggtgaagaagggcgacgatatctgcgcctgggacccctataacgcc
gttatcctgtctgaattgaccggtacgctgaacttcgacgcaatcgaagacggtatcaca
taccgcgaggagttcgatgaacagactggcttccaggagaaagtgatcatcgaaagccgc
gataaagcgaagaacccagccattattgtacaaggcaccacgacgttaacgttgcacttg
cccgacaacgatggtggtccgttgcagaagagctacaacttaccggttggctcacgtctg
gtagtgaaggaaggccagaaaattaaagctggtcagccattggcgaaaattccgcgtaac
gttggtaaaacccgcgacatcacgggtggtctgccacgggtaacggaattattcgaagct
cgtaacccgtcgaacccggctgtggtgagtgagattgatggcgttgtaacatacggtgca
atcaaacgtggtaaccgtgaaatcttcatcgagtcgagagatggaacgaagaagaagtac
ctcgttcctctgtcgaagttcatccttgtacaggataatgacttcgtacgggctggtgct
ccgctctctgacggtgccattacgccgagcgacattctggccattaaaggtccgaccgcc
gttcaggagtatctggtaaatgaaattcaggaagtatatcgtctgcagggcgtgaagatc
aacgataagcacatcgaagccattgttcggcagatgatgcagaaagttgagatcatcgac
tcgggtgacactaactttctcgaaggacaggttgtagacaagtgggcgttccgtgaggaa
aacgacaaggtgctcgacgctaaagtggttatggacgctggtgattcaccaaacgttaaa
cccggtcagatcgtgacgagccgtcagcttcgcgatgaaaactccagtctgaaacgtcgt
gaccaggcccttgtgaccgttcgtgacgccatggccgcagtttcgcaaccaacgctgatg
ggtatcacccagtcatctttgggtacagatagcttcatctcagccgcttccttccaggaa
acgacgaaagtactgagcgaagcctcgattcgtggtaagcgtgacgtacttgacggcctg
aaagagaacgtaatcgttggtcacctgattcctgccggtacaggccttcgtcgctaccaa
agtgcgattgtcggttcgaaagaggaactggaaacgattaccgaatcgcgcgaacagtac
gcccgcagcaaaaagaaagctacggtctaa
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