Spirosoma linguale: Slin_4864
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Entry
Slin_4864 CDS
T01156
Name
(GenBank) DEAD/DEAH box helicase
KO
K03726
ATP-dependent DNA helicase [EC:
5.6.2.4
]
Organism
sli
Spirosoma linguale
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_4864
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slin_4864
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
Slin_4864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Peptidase_C14
ResIII
DEXQc_Suv3
AAA_22
Peptidase_C13
Helicase_dom4_arc
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
8728628
NCBI-ProteinID:
ADB40842
UniProt:
D2QQR1
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All DBs
Position
5921962..5924976
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AA seq
1004 aa
AA seq
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MSSTRLLAGFIGINRHADQNIPDLSCARRDATALWALWQDTLLETSPILLVDEQATVVRI
DEVFAQTLDTANEQDIVLLAFSGHGTHNHRLVAHDTDKENLAETTISMAALAERFRRSKA
RHILLVLDCCFSGGASAKVIEDGLQSRGSGFSLEESFTGRGRVLLAAANVDEEAWEVDGH
GLLTYALIDALQTSDGPLEVAHMMADVSGRVRAEANRFGLTQTPKWVGDFEGGFTLPTLR
PGTNYYKEFPEKTGLHVSTDINELAGFNLPQTILSSWAAAYPDGLNELQLSAVNEYRLLD
GQSLLVVAPTSSGKTFIGEMAAVRAATANQRAVFLLPYKALTNEKYEDFTALYSAKLGLR
VIRCTGDFQDSTNAFIRGKYDIALLTYEMFLNLVVKNQGTLNRIGVVVIDEAQFITEPNR
GIIVELLLTYLLASRERGISPQVVALSAVIGDTNGFEHWLKCNALISTRRPVPLEEGVID
RSGIFEYIDPDTLTVQTRQLLPQGAVVQRRKEAGAQDVIVPLANVLLKQQVGAKLIVFRN
MRGKAEGVAGYLAKDLNLPPAHDVLALLPSNDLSKTSARLHDCLLGGTAFHNSNLSREER
EAVERSFRIKNGSVHVLGATSTLAAGINTPASAVILGETEFVGEDGRPFTIAEYKNMVGR
AGRLGYNERGQSFIIANTTLERRHLFQKYVLGRPEPLRSSFSNSHLATWVLRLLAQIPRL
LRNDVSSLLANTYGGYLAGRADPDWRQRTEVHVERIMVDLIQYGLVEQEDKHVQLTLLGF
ASANSSLAFPSIVRLLQVLQQIGSATVSLERLLALTQVLPELDDTYTPLFKNGSLEKTWP
RHVAIHFGEDIVHLYGRSLTDPLDYYRRSKRTLVVNDWIRGTSMETIESTYTNNSFLPTS
YGDVRRIADATRFHLRSVVPIVQALYPILDLNDEELDTLTTRLETGLPVTALPLIKISTL
TRGEILILVQNGIRDPANLWALDETKLGELIGINRAIELAKFRP
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgacccgattgcttgctggatttatcggtataaaccgccacgccgaccagaat
atacctgacttaagctgcgctcggcgggatgccacggccctgtgggcactctggcaggat
acacttcttgaaacgtccccgattttgttggtcgatgagcaagcaacggttgttagaatc
gatgaggtgttcgctcaaacacttgatacggccaacgaacaagatattgtactcttggct
ttctctggacatggtactcacaaccatcgactggtggcccatgatacggataaagagaat
ttggccgaaacgaccatttcaatggcagctttagctgagcggttccgtagaagcaaagcc
cgtcatattctgctggtattagattgttgctttagtggtggcgcgtcagctaaagtgatt
gaagacggtttacaatcacgaggtagcggtttttctcttgaagaatcattcacgggtagg
gggcgggtcctgctggctgcagctaacgtagacgaggaagcttgggaagttgatggacac
ggattgcttacttacgcactaatagacgctttacaaacatcagatggccccttggaggtt
gctcacatgatggctgatgtatcgggccgggtacgtgccgaagctaatcgtttcggtctg
acacaaacccctaaatgggtgggagactttgagggtggcttcaccctaccaaccttacga
cctgggactaattattataaagaatttcctgagaagactggccttcacgtctctactgat
attaatgaattagcggggttcaatctgccacagacgattctttcatcttgggcagcggca
tacccggatggtttaaacgagctacaactatctgctgtcaacgaataccggctattggac
gggcaatctctccttgtagtggctccaaccagcagtggtaaaacattcattggagaaatg
gctgctgtcagggccgcaacagcaaatcagcgggccgtatttctgttaccgtataaagcc
ttgactaatgagaaatatgaagactttacggctctgtacagtgcaaagttaggcttgcgt
gtcattcgttgtacaggagattttcaagattcaaccaacgcattcatacgggggaaatac
gatatagccttgctcacgtatgaaatgtttctcaacctggttgtaaaaaaccaagggacg
ctcaaccgcattggtgtcgtcgttatcgacgaagcccagtttataaccgagcctaaccgt
ggcattatagtagaacttctactcacatacctattagcctcccgtgaacggggcatttct
cctcaagtagtggcactttctgctgtaattggtgatacgaatggattcgagcattggtta
aagtgtaatgctctcatcagcacccgtcggccagtgcctctcgaagaaggagtcatcgac
cgctcgggcatatttgagtacatcgatcctgatacgctaactgtacaaacccgtcaattg
ctgccacaaggagcagttgtacaacgtcgtaaggaggctggtgcccaagatgttattgtt
ccgcttgccaacgtgcttctgaagcaacaagttggagctaaacttattgtcttccgcaat
atgcgtggcaaagcagagggagtagccggttatttggcgaaggatctaaatctaccacct
gcccatgatgtgctggcgttattaccttcgaatgatctttcaaagacttccgcccgttta
catgattgcttactaggaggtaccgcctttcataatagcaatctatcacgtgaagagcgc
gaagcagtggaacgaagttttcgaataaagaatggaagcgtacatgttctgggagcgaca
agcacacttgcagccggaattaatacaccggcatccgcagtaattttaggagaaacggaa
ttcgtaggggaggatggacgtccatttactattgccgagtataagaatatggttggccgc
gccggtcgtctaggctacaacgaacgcggccagtcattcataattgccaacacgactttg
gaacgtcggcatctttttcaaaagtacgttttaggtcgacctgaaccgctgcgttcctct
ttttcaaacagtcacttggccacatgggtactgcgattactggcgcaaataccgcgtttg
ctacgtaatgatgtatcctcattgctggctaatacatacggagggtatttagccggtcgt
gctgatccggattggagacagcgaacggaagtgcatgtcgagcggattatggtagacctt
attcaatacggtttggtggaacaagaagacaagcatgtacaattaacactgttgggattt
gcttctgctaactcgtcgctggcgtttccttccatcgttcgtttgctgcaagttctgcaa
caaataggttccgcaacggtaagtctggaacggctgttggctcttactcaggtcttacct
gaacttgacgatacatatacgccactatttaagaatggtagccttgaaaagacgtggcct
cgccacgtagctatacattttggagaggatattgttcatctttatggacgttcgttaacc
gatccactggattactatcgtcgatcaaaacgaactttagtcgtaaatgattggataagg
gggacctcaatggaaaccattgaaagtacctataccaacaactcatttttaccaacgagt
tatggcgatgtgcgacgtatagctgatgccacacgatttcacttacgttcagttgttccc
atcgttcaagcactatatccgattcttgacttaaacgatgaggaattggatacgttgacc
acccgtttagaaactggcttaccggttacagcattacccttaataaagatatcaactttg
actcgtggagaaatcttaatactcgttcagaatgggatacgtgatcctgcgaatttatgg
gcactagacgagactaagttaggtgaactgattggaataaaccgtgcgattgaacttgcg
aaattccggccctaa
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