Spirosoma linguale: Slin_5457
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Entry
Slin_5457 CDS
T01156
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
sli
Spirosoma linguale
Pathway
sli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Slin_5457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_5457
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Slin_5457
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Slin_5457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
UvrA_DNA-bind
AAA_21
AAA_29
AAA_16
nSTAND1
UvrA_inter
RsgA_GTPase
AAA_33
AAA_22
AAA_25
nSTAND3
DnaJ_CXXCXGXG
Viral_helicase1
AAA_23
APS_kinase
NACHT
cobW
NTPase_1
LuxS
Motif
Other DBs
NCBI-GeneID:
8729224
NCBI-ProteinID:
ADB41423
UniProt:
D2QFW0
LinkDB
All DBs
Position
complement(6638049..6641042)
Genome browser
AA seq
997 aa
AA seq
DB search
MTQTTETERFSSVDQLDPKQFIIIKGAKVHNLKGIDVAIPRNKLVVLTGLSGSGKSSLAF
DTLFAEGQRMYVESLSSYARQFLGRMEKPEVEYIKGVSPAIAIEQKVSTRNPRSTVGTST
EIYDYLKLLFARSGVTYSPISGHEVKKDTVTDVVNFMYGYEAGPGGAPQRVMIMAPLRIR
EGRTLAYELNILLQKGYTRIVADGGQDDAASSARQVLQIEDILENEGNYASLFADHASLE
ILVDRGTVLYDANGNPDEDNQYRFSDSVQTAFSEGEGTCRVDVVGKESRVFSDKFELDGI
AFEEPSVNLFTFNNPYGACRRCDGFGKVLGIDPDLVVPDKNLSVFEGAIAPWRSEKMSEE
FLKPLLKNGIRFDFPIHRPYKDLTPAEQELLWTGNKYFDGINAFFAFVESQTFKVQYRVM
LSRYRGKTTCPECRGSRLRKDAGYVKVGGKSITDLVLMPLTHVTAFFQDLELPAHQQQVA
NRILIEIRNRLDFMERVGLGYLTLNRLTNTLSGGEYQRIKLATSLGSALVGSMYILDEPS
IGLHPRDTQRLVSVLEALRDMGNTVIVVEHEEEVMRAADQLIDIGPDAGSLGGHLMFQGT
WGDIKELGARSEERGVADASGSLHASATPHSSLLAPHSSSSHTIDFLTGRETVPVPTFRR
KATNFIELKGARENNLKDVDVRFPLNTLTVVTGVSGSGKSTLIRKVLYPALMRQRGEGTE
EAGRFDSLSGSLERISSVEMIDQNPIGKSSRSNPVTYIKAYDYLRQVMADQPVSKSRGYK
PSHFSFNVDGGRCEVCQGEGEVKIEMQFMADIYLKCEGCGGKRFKQEVLEVTLHDKNISD
ILDMTVDEAIVFFRKVDNKMADKLQPLQDVGLGYIGLGQSANTLSGGEAQRVKLASFLGK
GNPNKGSMLFIFDEPTTGLHFHDIRKLLAAINALVDQGDSVIIIEHNMEVIKNADHIIDI
GPEGGETGGYIMFTGTPEEMVKLDDGNHTARYLKGKV
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgactcagaccacggaaaccgaacgctttagttccgttgaccagctcgaccccaaacag
ttcattatcattaaaggggcgaaagtacataatcttaaaggaattgatgttgccattccg
cgcaacaaattagttgtcttaacggggctgtctggttcgggcaaatcgtcgctggctttc
gatacgctctttgccgaggggcagcggatgtacgtcgaaagcctgagcagctacgcccgg
cagtttctggggcggatggaaaagcccgaggtggagtacatcaaaggggtgtcgcccgct
attgccatcgagcaaaaagtgtcgacccgaaatccgcgctcaaccgtagggacctcaacc
gaaatctacgactacctcaagctgctttttgcccggtccggggttacgtattcgcctatt
tcgggccatgaggtgaagaaagataccgttacggatgtcgtcaacttcatgtatgggtat
gaggccggtccgggtggcgctccacagcgggtcatgatcatggctcccctgcgcatccgc
gaaggccggacgctggcctatgaacttaatatcctgctgcagaaaggctacacccgtatt
gtggcggatggcggtcaggatgatgccgcatcgtcggctcggcaggtgctgcaaatcgaa
gatattttagagaatgaaggcaactatgcctccctctttgcggatcacgcttctcttgag
attctagttgaccggggaacggtgctgtacgatgccaacggtaacccggacgaagacaac
caataccgcttttcggactccgtacaaacggcgttcagcgaaggggaaggtacctgccgg
gtggatgtggtgggtaaagagtcgcgggttttctccgataaatttgaactcgacgggatt
gccttcgaagagccaagtgtaaacctgttcacgttcaacaatccctacggagcctgccgc
cggtgcgacggctttggaaaggtgctgggcatcgacccggatttagtcgttcccgataaa
aacctgtcggtctttgaaggagccattgcgccctggcggagcgagaaaatgagcgaggag
tttttgaaaccgctactaaagaacggcatccgattcgatttcccgattcatcgcccatac
aaagacctcacacccgccgagcaggaactgctctggaccggcaacaagtatttcgatgga
atcaacgcgttctttgccttcgtggaaagtcagactttcaaggtgcagtaccgcgtcatg
ctgtcgcgctaccggggaaaaacgacttgtcccgagtgccggggctcgcgcttgcggaaa
gatgcgggctatgtaaaagtaggcgggaaatccattaccgaccttgtgctcatgcccctc
acgcacgtcactgcgttcttccaagacctggaactgcccgcccatcagcaacaggtggcc
aaccgaattttgatcgaaattcgtaatcggctcgactttatggagcgtgttggacttggt
tacctgaccctcaaccgcctgaccaatacgctgtcgggtggcgaatatcagcgcattaag
ctggccacctcccttggctcggcgctggtgggatcgatgtatattctggatgaacccagt
attggcttgcatccccgcgatacccagcggctggtgagcgtactggaagccctccgcgac
atgggcaacacggttattgtggtcgaacacgaagaagaggtgatgcgtgccgccgaccag
ctcatcgacatcggccccgacgccggttcgctgggcggccatctgatgtttcagggcaca
tggggggatattaaggagctaggagcgaggagcgaggagcgaggagttgctgacgcgtct
ggttcgctgcatgcgtcagcaactcctcactcctcactcctcgctcctcactcctcctct
tcacacaccatcgactttctcacgggccgtgaaaccgttccggtgccgacgttccggcgg
aaggcgaccaactttattgaactgaaaggcgctcgggagaataaccttaaggatgtagac
gtgcggtttccgctcaatacgcttaccgttgtaacgggcgtgtcgggttcggggaagagt
acgctgatccggaaagtgctgtaccccgccctcatgcggcaacggggcgaaggcaccgaa
gaggctggtagattcgatagtctgagcggttcgctcgagcggatctcgtcggttgaaatg
attgaccagaacccgattggtaaatcgagccggtcgaatccggttacctatattaaagca
tacgattacctccggcaggtaatggccgaccaacccgtatcaaaatcgcgcgggtacaag
cccagtcatttctcgttcaacgtggatggcgggcgttgtgaggtatgccagggtgagggt
gaagtgaaaatcgagatgcagttcatggccgacatttacctcaagtgcgaaggctgtggc
ggcaaacgcttcaagcaggaagtgctggaggtaaccctgcacgataaaaacatctcggat
atactcgatatgacggtcgacgaagccattgtcttcttccgcaaggtagataacaaaatg
gccgataaattgcagccccttcaggatgtaggattaggctatattggtctggggcagtcg
gctaatacgctgtcgggtggcgaagcccaacgggtaaaactggcatcgttcctcggcaaa
ggcaatcccaacaaaggcagcatgctgttcatcttcgacgaacccacaacggggctgcac
ttccacgatattcgtaagttgctggcggccatcaacgcgctggtcgatcagggcgactcg
gtaattatcatcgagcacaacatggaagtcatcaaaaacgccgaccatattatcgacatc
ggtcccgaagggggcgaaaccggtggttatatcatgttcaccggcacccccgaagagatg
gtaaagctggacgatggtaatcacaccgcccgttacctcaaggggaaagtatag
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