Spirosoma linguale: Slin_5514
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Entry
Slin_5514 CDS
T01156
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sli
Spirosoma linguale
Pathway
sli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Slin_5514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_5514
Enzymes [BR:
sli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Slin_5514
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Slin_5514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8729282
NCBI-ProteinID:
ADB41480
UniProt:
D2QG17
LinkDB
All DBs
Position
6708826..6712206
Genome browser
AA seq
1126 aa
AA seq
DB search
MCDLQPDFRLKPDELLGLYADDSFIKLLAEPFSRKASSEPKRLQIKGLVGSLDAVVASTI
FKSVGGNHLYILTDRDEAAYFFNDLQNLLSREVLLFPMSYKKPYQYEEIENANVLMRAEV
LNKLNPAPKDGLLMVTYPEALSEKVINKRSLQANTLTIRVGEKLDTHFVSELLQTYEFEK
TDFVYEAGQFSVRGGIIDVFSFASEFPFRIDLFGDEVESIRKFNPESQLSTDAVDFINVI
PNIQTKLVQETRESFFDFLPEATTIWAKDVEFTLEIIEKNFEKAEQSFATVLESSGGIQI
VSDPNALFETRRTFLNELKRFQTVEFGRKFYFKTEGRQQYNSKPQPSFNKDFKRLIDTMA
DLQSKGFTNVIAAESFKQLDRLRTIFEELDPFVKFQSMNVGLREGYIDDALKIACFTDHQ
IFDRYYKYRVQDKFSKSKALTLRELKTLQPGDYVTHVDYGIGRFAGLEKVDHGGNEQEAI
RLIYRDNDILLVSIHSLHKIAKYSGREGGPPTMSKLGSQEWEQKKSRIRKQVKDIARELI
ALYAKRRTAPGYAYSRDSFLQAELESSFLYEDTPDQAKATNDVKDDMERPHPMDRLVCGD
VGFGKTEIAIRAAFKAVTDNKQVAVLVPTTILAMQHFKTFSERMADFPVKIEYINRFRTA
GQIKEILKGVSSGEIGILIGTHRIVNKDIKFKDLGLLVIDEEQKFGVKTKDRLKEMRVEV
DVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHAFNEAIIRDAVSSEVRRG
GQVFFVHNRVNDIESIGNLIMRLVPEARIGVAHGQMDGERLERIMTRFIEGDYDVLISTN
IIESGLDIPNANTILINNAHYFGLSDLHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKR
LQTLEDFSDLGEGFKIAMRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKVLDEAVQELREN
EFKDLFETKPGDLKLSLPDTVIETDLQVVIPEKYVSNISERLALYTRLDSLQNDNEVQAF
RQEVIDRFGPMPEEVENLIKMVNVRWKAEQLYLEKLTLKNNIMKGYFVSNGNDEFFKSDQ
FGKVIEYIKRNPTKSSLKESKGRPIITHSDVYSVEQLGEIMGALTN
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgacttacaacctgactttcgtttgaaacctgatgaattactcggcctttacgcc
gacgatagttttataaaactgctcgctgaaccatttagccgaaaagcatcgagcgagcca
aaacgattgcagatcaagggtttggttggaagcctggacgcagtagtggcctcaacgatt
tttaagtcggtaggagggaatcacttatacatactgacggatcgtgatgaggctgcgtac
ttcttcaacgacctgcaaaacctgctaagccgtgaagtccttctgttcccgatgtcgtac
aaaaagccgtatcaatacgaagaaattgaaaacgccaatgtactgatgcgggcggaggtg
ctgaacaaactcaacccggcacctaaagacggcttgctgatggtaacgtaccccgaagcg
ttgtctgaaaaggttatcaacaagcggtcgttgcaggcaaatacgctaaccattcgggtt
ggagaaaagctggatacgcacttcgtttctgaattactccagacgtatgagtttgagaag
accgattttgtgtacgaagcgggtcagttttctgtacgggggggcatcattgacgtattt
tcgttcgccagcgagttcccgttccgaatcgatctattcggtgatgaagttgaaagcatt
cggaaattcaatccagagtcgcagttgtcgacagatgccgtcgactttattaacgtaatt
cccaatattcagacaaaactggttcaggaaactcgggaatcctttttcgactttttgccg
gaagccacaacgatctgggcaaaagacgttgaatttacgcttgaaatcatcgagaaaaac
ttcgaaaaggcggagcaaagctttgctaccgtgctggaaagtagcggaggcattcaaatc
gtttccgacccaaatgccttatttgagacccggcgtacatttctgaatgaactgaagcgg
tttcaaacagtagaattcggccggaaattttactttaaaacggaaggtcgtcagcagtat
aactccaagccgcaaccgtcgtttaataaggactttaaacggctgatcgacacaatggct
gatcttcagtcgaagggttttaccaacgtaattgcggccgaatcgtttaagcaactggat
cgattacgaaccatctttgaagaactggacccgtttgtaaaattccagtccatgaatgta
gggcttcgggaaggttatatagacgatgccctcaaaattgcctgttttaccgatcaccag
attttcgaccggtactacaaataccgcgttcaggacaagttttcgaagtcaaaagccctt
acacttcgcgagttaaaaacgcttcaaccaggtgactacgttacccatgttgactacggt
attggccggtttgcgggtcttgaaaaagtagatcatggcggtaacgaacaggaggctatt
cggcttatttaccgcgacaatgacatactactcgttagtattcacagccttcataaaata
gccaaatacagcggccgggaaggtgggccgccaaccatgagtaagcttggttcgcaggag
tgggaacagaaaaagtcccgtattcggaagcaggtaaaagacattgcgcgtgaattgatt
gccctgtacgcaaaacgccgaacagcgcccggttatgcctacagccgagatagttttcta
caagctgagcttgagtcgtcgttcctttatgaggacacaccagaccaggccaaggcgacg
aacgacgtcaaagatgacatggaacgtccgcacccgatggatcggctagtgtgtggcgac
gttggctttggcaaaactgaaattgcaatccgggccgcgttcaaagccgttacggataat
aagcaggtagctgttctggttcctacgaccatcctcgccatgcagcatttcaagacgttt
tcggagcgaatggccgactttccagtcaagattgaatacatcaatcgatttagaacggcg
ggtcagataaaagagattttaaaaggagtcagttcgggcgaaattggtattctaatcggt
acccaccggattgtcaataaagacatcaaattcaaagacctgggccttcttgtcattgac
gaagaacaaaaatttggtgtaaagaccaaagatcggttgaaagaaatgcgggtagaggta
gacgtacttacacttacggctactccaattccccgtacattacacttctcgctgatgggt
gcccgggatctttcggtcattgcaacacctccgccaaaccgccagcccgtaactacagaa
gttcatgcattcaatgaagcgattatccgggatgccgtaagttcggaagtcaggcgggga
ggtcaggtgtttttcgttcataaccgggtcaatgatattgaatcgatcggcaacctgatc
atgcgcctggttcctgaggcccgcattggcgttgcacatggtcagatggatggcgagcgg
ctggagcgaatcatgacccgattcatcgaaggagattatgatgtacttatctcgacaaat
atcattgaatcggggctcgatattcccaatgcaaacacgattttgatcaataatgcgcat
tactttggtttgtctgacctacaccagatgcggggtagggtagggcgctctaaccgaaag
gcattttgttacctgcttacaccaccgccttctgtgctcaccgcagatgcccgaaagcgg
cttcagaccctggaagatttctcggatttaggcgagggtttcaaaattgccatgcgcgac
ctggacattcgtggggcaggaaatctactaggcgctgaacagagtggttttgtgaatgac
cttgggttcgaaatgtaccataaagtgcttgacgaagcggttcaggagctgcgggaaaat
gagtttaaagacttgttcgaaacaaagccgggcgatttgaaactttcccttcccgatacg
gttattgagactgatttacaggttgttattccagagaagtacgtatcgaatatttcggag
cgcttagcgttatatacacgtttggacagtcttcagaatgacaatgaagtacaggcattt
agacaggaagtcatcgaccggttcggaccgatgcctgaggaggttgaaaacctgattaaa
atggtaaatgttcgctggaaggccgagcaattataccttgaaaaactgacgcttaagaat
aatatcatgaaaggatacttcgtttctaacgggaacgatgagttctttaaatcggaccag
tttggcaaggtaattgagtacatcaagcgaaacccaaccaaaagttcgttgaaagagtca
aagggaaggccaattattacgcattcagacgtttattccgtcgagcaattaggcgaaata
atgggcgcattgacaaattaa
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