Spirosoma linguale: Slin_5592
Help
Entry
Slin_5592 CDS
T01156
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sli
Spirosoma linguale
Pathway
sli03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Slin_5592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_5592
Enzymes [BR:
sli01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Slin_5592
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Slin_5592
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Slin_5592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
Motif
Other DBs
NCBI-GeneID:
8729366
NCBI-ProteinID:
ADB41557
UniProt:
D2QRX5
LinkDB
All DBs
Position
complement(6807740..6808555)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVEIRRQYLETSSLYQPVSHIEVEDKKLLTTDLATLQQALIGRQFTGTRRVGKNL
FIFTDAPDVIIHMHFGMTGDLEYYHASLDRPRFARIVFEFTSGFNLGFLCPRKFERVGLV
TDVDAFLLRKKIGEDGLDISLETLSDRVRRKKAFIKPVLLDQSVVAGLGNWIVDEVLFQA
LIHPEQRADTLTNDQMASLHIAIRLVLETAIRYEATYRDFPIGFLIHVREWDDSPYDDVE
AHKYCPRCKTRIERSVVGGRTTFFCPKEQCV
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaggttgaaatcagacgccaatatctcgaaacatcctctctctac
cagcccgttagccatatagaggtggaagacaaaaaacttcttacaaccgatctggctaca
ctgcaacaggctcttatcgggcggcaatttaccggtacccgccgggtcggtaaaaatctg
ttcatttttaccgatgcgcccgatgtcattatccatatgcactttggcatgaccggcgat
ttggaatattaccacgcatctctcgaccggccccgctttgcccgaatcgtgttcgaattt
acgtcgggtttcaaccttggctttctgtgcccccgaaaattcgaacgcgttggcctcgtt
acagacgtcgacgcctttctgttgcgcaaaaagattggtgaggatggcctcgacatttcg
ctggaaaccctaagcgaccgcgttcgccggaaaaaggccttcatcaaacctgttctgctc
gaccagagcgtagtggccggtttgggcaactggattgtcgacgaggtgttgtttcaggca
ttgatccatcctgaacaacgcgccgacaccctcaccaatgaccagatggccagcctccac
atagctattcggctggtactcgaaacggccattcgctacgaagccacgtatcgggacttt
cctattggttttttgatccacgttcgtgagtgggatgattctccttatgatgatgtggaa
gcgcacaagtactgcccccgttgcaaaacccgtattgaacgctcggtggtgggtggccga
accacgttcttctgcccgaaagagcaatgtgtttag
DBGET
integrated database retrieval system
