Streptomyces liangshanensis: HA039_15030
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Entry
HA039_15030 CDS
T07519
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
slia
Streptomyces liangshanensis
Brite
KEGG Orthology (KO) [BR:
slia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slia03032
]
HA039_15030 (topA)
03400 DNA repair and recombination proteins [BR:
slia03400
]
HA039_15030 (topA)
Enzymes [BR:
slia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HA039_15030 (topA)
DNA replication proteins [BR:
slia03032
]
Prokaryotic type
DNA Topoisomerases
HA039_15030 (topA)
DNA repair and recombination proteins [BR:
slia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HA039_15030 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QIQ03473
UniProt:
A0A6G9GYW0
LinkDB
All DBs
Position
complement(3485529..3488405)
Genome browser
AA seq
958 aa
AA seq
DB search
MSPTSEAAHGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGE
VRRLGVDVNNDFEPIYVVNADKKAQVRKLKELLAESDELYLATDEDREGEAIAWHLQEVL
KPKVPVHRMVFHEITKDAIRAAVANPRELNTRMVDAQETRRILDRLYGYEVSPVLWKKVM
RGLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFSTGRAGDASDPSSLLARLNAVD
GKRVAQGRDFGSDGRIKSDQTLHLDEANARALAAALENASFSVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGFGAKSTMQVAQKLYENGFITYMRTDSTTLSDTAISAARAQVTQLYGA
NYLPDKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLSGDQFRLYELIWKRTVASQMK
DAVGNSVTVKIVGSASDGREAEFSASGKTITFHGFMKAYVEGADDPNAELDDRERRLPQV
AEGDALSAEELSVDGHSTKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLETHFGRLVDYDFTARMEDDLDRIARGEAHSVPWLKRFYFGEGG
DGEDVGAASAAGNGDGDHLGGLKELVTDLGAIDAREISSFPVGDGIMLRVGRYGPYVERG
EKDEEGHQRADVPEEMAPDELTVEYAEELLAKPSGDFELGADPVTGNQIVAKDGRYGPYV
TEILPENTPKTGKNAVKPRTASLFKSMSLDTVTIDDALKLMSLPRVVGTDAEGVEITAQN
GRYGPYLKKGTDSRSLTTEDQLFDITLDEALAIYAQPKQRGRAAAKPPLKELGTDPVSER
PVVVKDGRFGPYVTDGETNATLRTDDSVEAITPERGYELLAEKRAKSPAKKTAKKAPAKR
APAKKATTAKKAVAKKTTAKTAAKKTTAAKSTAAKSTAAKSTAKKTSASASRSAKTDE
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgaagccgcacacggcggccgccgactcgtcatcgtcgagtcgccc
gccaaggcgaagacgatcaagggctacctcggccccggatatgtcgtcgaggcgagcgtc
gggcacatccgcgacctcccgaacggtgccgccgaggtgccggagaagtacacgggcgag
gtacgccgtctcggcgtggacgtgaacaacgacttcgagccgatctacgtcgtcaacgcc
gacaagaaggcacaggtcagaaagctcaaggagctgctggccgagtccgacgagctctac
ctcgccaccgatgaggaccgcgagggcgaagccatcgcgtggcacctccaggaagtcctg
aagcccaaggtccccgtccaccggatggtcttccacgagatcaccaaggacgcgatcagg
gccgccgtcgccaacccgcgcgagctgaacacgcgcatggtcgacgcccaggagacccgc
cgtatcctcgaccggctgtacggctacgaggtctcgccggtcctgtggaagaaggtcatg
cgcggcctgtccgccggccgtgtgcagtccgtcgccacccgcctcgtcgtcgagcgcgag
cgggagcgcatcgcgttccgctccgccgagtactgggacctgaccggcacgttctccacc
ggccgtgccggtgacgcctccgacccgtcctcgctgctcgcccggctcaacgcggtcgac
ggcaagcgggtcgcccagggccgtgacttcggttccgacggccggatcaagtccgaccag
acgctccacctggacgaggcgaacgcgcgcgccctggccgccgcgctggagaacgcttcc
ttctcggtgcggtccgtcgagtcgaagccgtaccgccgctccccgtacgcccccttccgt
acgacgacgctccagcaggaggcctcgcgcaagctgggcttcggggccaagtccacgatg
caggtcgcgcagaagctgtacgagaacggcttcatcacctatatgcgtacggactccacg
acgctctccgacaccgcgatctcggcggcccgcgcgcaggtcacgcagctgtacggggcg
aactacctgccggacaagccgcgcacgtacgccggcaaggtcaagaacgcgcaggaggcg
cacgaggcgatccggccttcgggtgatcgtttccgcacgcccgccgagacgggtctgtcc
ggcgaccagttccgcctctacgagctgatctggaagcggaccgtcgcctcccagatgaag
gacgcggtcggcaacagcgtcaccgtcaagatcgtcgggtccgcctccgacggccgcgag
gcggagttctccgcgtccggcaagacgatcaccttccacggcttcatgaaggcgtacgtc
gaaggcgccgacgacccgaacgccgagctggacgaccgcgagcgccgactgccgcaggtc
gccgagggcgacgcgctgtccgccgaggaactgtccgtcgacggccactccaccaagccc
ccggcccgctacacggaagcgtcgctggtcaaggagctggaggagcgcgagatcggccgc
ccgtccacgtacgcctcgatcatcgggaccatcctcgatcgcggttacgtgttcaagaag
ggcacggcgctcgtcccgtccttcctctccttcgccgtggtcaatctgctggagacccac
ttcggccggctcgtcgactacgacttcacggcccggatggaggacgacctcgaccgcatc
gcgcggggcgaggcgcactccgtgccgtggctcaagcgcttctacttcggcgagggcggg
gacggcgaggacgtcggcgccgcctcggccgcgggcaacggcgacggggaccacctcggc
ggcctgaaggaactggtcacggacctcggcgcgatcgacgcccgggagatctcctcgttc
cccgtcggcgacggcatcatgctgcgcgtcggccggtacgggccgtacgtggagcgcggc
gagaaggacgaagagggccaccagcgcgccgacgtgcccgaggagatggcaccggacgag
ctgacggtcgagtacgcggaagagctgctggccaagccgagcggcgacttcgaactgggc
gccgaccccgtgacggggaaccagatcgtcgccaaggacggccggtacggcccgtacgtc
accgagatcctcccggagaacaccccgaagacgggcaagaacgcggtcaagccgcgtacc
gcctccctcttcaagtcgatgtccttggacacggtcaccatcgacgacgccctcaagctg
atgtcgctgccgcgtgtggtggggacggacgccgagggggtcgagatcacggcgcagaac
ggccggtacggcccgtatcttaagaagggcaccgactcacggtccctgacgaccgaggac
cagctcttcgacatcacgctcgacgaggcgctggcgatctacgcccagccgaagcagcgg
ggccgcgccgcggccaagccgccgctcaaggaactgggcacggacccggtgagcgagcgt
cccgtggtggtgaaggacggccggttcgggccgtacgtcaccgacggcgagacgaacgcg
acgctgcggacggacgacagcgtcgaggcgatcactcctgagcggggttacgagctgctc
gcggagaagcgcgccaagtcgcctgccaagaagacggcgaagaaggcccccgccaagcgc
gcgccggccaagaaggcgacgacggcgaagaaggccgtcgcgaagaagaccacggcgaag
acggccgccaagaagacgacggcggcgaagtccacggcggcgaagtcgaccgcggcgaag
tcgacggccaagaagacgtccgcctccgcttcgaggtcggcgaaaacggacgaatag
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