Streptomyces liangshanensis: HA039_19470
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Entry
HA039_19470 CDS
T07519
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
slia
Streptomyces liangshanensis
Pathway
slia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slia00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HA039_19470
09124 Replication and repair
03420 Nucleotide excision repair
HA039_19470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slia03021
]
HA039_19470
03400 DNA repair and recombination proteins [BR:
slia03400
]
HA039_19470
Enzymes [BR:
slia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HA039_19470
Transcription machinery [BR:
slia03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HA039_19470
DNA repair and recombination proteins [BR:
slia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HA039_19470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
IMD
ETAA1
Motif
Other DBs
NCBI-ProteinID:
QIQ04195
UniProt:
A0A6G9H109
LinkDB
All DBs
Position
complement(4485308..4486951)
Genome browser
AA seq
547 aa
AA seq
DB search
MNGPLIVQSDKTLLLEVDHDQAGACRRAIAPFAELERAPEHIHTYRLTPLGLWNARAAGH
DAEQVVDALVEFSRYPVPHALLVDVAETMARYGRLTLSKHPTHGLVLTSTDRPVLEEILR
SKKVAPLVGARLDPDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHAIDLVEDGWA
LRPYQKQAVEGFWHGGSGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHEL
VKRTTLTEEEIGEYSGTRKEIRPVTIATYQVLTTRRKGVYPHLELFDSRDWGLILYDEVH
LLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPA
DCVEVRVNLTDSERLAYATAETEEKYRFCATTATKRKVTEALVRKHKGEQTLVIGQYIDQ
LDELGEHLDAPVIKGETSNAQREKLFESFRQGEISVLVVSKVANFSIDLPEATVAIQVSG
TFGSRQEEAQRLGRVLRPKADGHEARFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIVDA
DELLAGN
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
gtgaacggacccctcatcgtccagagcgacaagaccttgctgctcgaagtcgaccacgac
caggccggagcctgccggcgggccatcgcgccgttcgccgaactggagcgcgcgcccgag
cacatccacacgtaccggctgaccccgctcggcctgtggaacgcccgcgccgcggggcac
gacgccgagcaggtggtcgacgcgctggtggagttctcccgctaccccgtgccgcacgcc
ctcctcgtcgacgtcgccgagacgatggcccgctacggccgcctcacgctgtccaagcac
cccacccacggtctggtcctgacctccacggaccggcccgtcctggaggagatcctccgg
tcgaagaaggtcgccccgctggtcggcgcgcggctcgacccggacaccgtcgccgtgcac
ccctccgagcgcggccagatcaagcagacgctcctcaagctgggctggccggccgaggac
ctcgccgggtacgtggacggcgaggcgcacgcgatcgacctggtggaggacggctgggcc
ctgcgcccgtaccagaagcaggccgtcgagggcttctggcacggcggttccggggtggtc
gtgctgccctgcggcgcgggcaagaccctggtcggcgcgggggcgatggcgcaggcgaag
gcgacgacgctgatcctggtcacgaacaccgtctcggcccgccagtggaagcacgagctg
gtgaagcgcacgacgctgaccgaggaggagatcggcgagtacagcggtacgcgcaaggag
atccggccggtcacgatcgccacgtaccaggtcctcacgacccgcaggaagggcgtctac
ccgcacctggagctgttcgactcgcgcgactgggggctgatcctctacgacgaggtgcac
ctgctgcccgcgcccgtcttcaagttcaccgccgacctccaggcgcggcgccggctcggg
ctgaccgcgacgctcgtccgggaggacggccgcgagtcggacgtcttctcgctgatcggg
ccgaagcggttcgacgcgccgtggaaggagatcgaggcacaggggtacatcgcgcccgcg
gactgcgtggaggtacgggtcaacctcaccgacagcgagcggctcgcgtacgccaccgcc
gagacggaggagaagtaccgcttctgcgcgacgaccgccacgaagcggaaggtgacggaa
gcgctggtccggaagcacaagggcgaacagaccctggtcatcggccagtacatcgaccag
ctcgacgagctgggcgagcatctggacgcgccggtcatcaagggcgagacgagcaacgcc
cagcgcgagaagctcttcgagtcgttccggcagggcgagatctcggtgctggtcgtgtcg
aaggtggcgaacttctcgatcgacctgccggaggcgacggtcgcgatccaggtgtcgggc
acgttcgggtcgcgccaggaggaggcgcagcgcctcgggcgggtgctgcggccgaaggcg
gacgggcacgaggcgcggttctactcggtggtcgcgcgggacacgatcgaccaggacttc
gcggcgcaccggcagcggttcctggcggagcaggggtacgcctaccggatcgtggacgcg
gacgagctgctcgcggggaactga
DBGET
integrated database retrieval system
