Sphingomonas lindongxini: SH584_07590
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Entry
SH584_07590 CDS
T11838
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
slid Sphingomonas lindongxini
Pathway
slid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SH584_07590 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slid03021
]
SH584_07590 (rho)
03019 Messenger RNA biogenesis [BR:
slid03019
]
SH584_07590 (rho)
Transcription machinery [BR:
slid03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SH584_07590 (rho)
Messenger RNA biogenesis [BR:
slid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SH584_07590 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
AAA_22
NACHT
Spore_III_AA
AAA_25
AAA
OB_RNB
Fungal_virus_P2_C
AAA_14
Motif
Other DBs
NCBI-ProteinID:
WRP24924
LinkDB
All DBs
Position
complement(1499026..1500282)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKQKSPADLVAMAEEMGVEGASTLRKQDLMFGILKVRAENGAEIMGMGTIEVLND
GFGFLRSPEANYLAGPDDIYVAPNLVRRFGLRTGDTVEGEIRAPKDGERYFALTRVSQIN
FDEPEAVRHRVNFDNLTPLYPDSKLRLDTLDPTVKDKSARVIDIVAPLGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVNGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSKMDEVIFEEFKGTGNSEIVLDRKVSDKRIFPSLDV
GKSGTRKEELLVEQGTLSKMWVLRRILMQMGTIDAMQFLLDKMKDAKSNEDFFASMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaggacctcaagcagaaaagccccgccgacctcgtcgcgatggccgaggaa
atgggcgtcgaaggcgcatcgaccctgcgcaagcaggacttgatgttcggcattctgaag
gtccgcgccgagaatggcgccgagatcatgggcatggggacgatcgaggtcctcaacgat
ggtttcggcttcctgcgcagcccggaagccaattatctcgccggccccgacgacatctat
gtcgcgccgaacctcgtccgccgcttcgggctccgcaccggcgacaccgtcgagggtgag
atccgcgcgcccaaggacggcgaacgttatttcgcgctgacccgcgtcagccagatcaat
ttcgacgagcccgaagcggttcgccatcgcgtcaacttcgacaacctcacaccgctctat
cccgacagcaagctgcggctcgacacgctcgacccgaccgtcaaggacaagagcgcgcgc
gtgatcgacatcgtcgcgccgctcggcaagggccagcgcgcgctgatcgtcgcgccgccg
cgtaccggcaagaccgtgctgctgcagaacatcgccaaggcgatcaccgacaaccacccc
gaggtgttcctgatcgtcctgctgatcgacgagcggcccgaggaagtcaccgacatgcag
cgttcggtcaacggcgaggtcgtttcctcgaccttcgacgaacccgcgcagcgtcacgtc
caggtcgccgaaatggtgatcgaaaaagccaagcgcctcgtcgagcacaagaaggatgtc
gtcatcctgctcgactcgatcacgcgcctcggccgcgcctacaacaccgtcgttccgtcg
tcgggcaaggtcctgaccggtggtgtcgacgccaacgcattgcagcgccccaagcgcttc
ttcggcgccgcgcgcaatatcgaggagggcggatcgctctcgatcatcgccaccgcgctg
atcgacaccgggtccaagatggacgaggtcatcttcgaagagttcaagggcacgggtaac
agcgaaatcgtgcttgaccgcaaggtcagcgacaagcgcatcttcccgtcgctcgacgtc
ggcaagtccggcacccgcaaggaagagctgctggtcgagcagggcacgctcagcaagatg
tgggtgcttcgccgcatcctcatgcagatgggcacgatcgacgcgatgcagttccttctc
gacaagatgaaggacgccaagtcgaacgaggatttcttcgcgtcgatgaaccagtaa
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