Sodalis ligni: GTU79_00470
Help
Entry
GTU79_00470 CDS
T08321
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
slig
Sodalis ligni
Pathway
slig02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GTU79_00470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slig03000
]
GTU79_00470
Transcription factors [BR:
slig03000
]
Prokaryotic type
Helix-turn-helix
Other families
GTU79_00470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
HTH_8
AAA_5
GAF_3
AAA_2
AAA
AAA_16
IstB_IS21
bpMoxR
Mg_chelatase
AAA_3
DUF155
TIP49
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
QWA11353
LinkDB
All DBs
Position
103166..104785
Genome browser
AA seq
539 aa
AA seq
DB search
MNQVVNPLTNHVATHSLLTESLSFSCHLGECRSELLPLLSEVSKVVSREGSLSKTLKLVL
ELMQKHLQVTRAMISLYDASCDQIFIHESFGLSREESEKGVYYPGEGITGKVVETRQPII
VPVIADEPLFLNRTGSWDRNLDSRLSFICVPIMRGMKVMGTIGVERLYNNRQLLHLDLEV
LGIIATTIAQAVELHLLERAHKQVLQAQSARLNSELKEKFKPSNIIGNSKAMQSVYMMID
KVSHARTTVLILGESGVGKERVASAIHYNSSCAHGPFIKFNCASLPESVIESELFGHEKG
AFTGAVARRAGRFEEAHGGTLFLDEVGELSPAVQAKLLRVIQERCFERLGSNESIKVNVR
ILAATHCDLTEMVEKGTFREDLFYRLNVFPITIPPLRERGNDILLLAEHFNAYFAKEQQV
DVPTIATPALNLLLSYDWPGNVRELENLMERAVLLAEGGVIHSYNLPNGLQPAVLGELGG
QSGLEARLSLMEYEIIVESLSRHQGNMSKAAAQLGLTRRMLGLRMAKYRLNYKDYRCGG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagtcgttaacccactgacaaatcacgtcgccacccactctttattgacggag
tcattgtccttttcctgccacttgggtgagtgccgttccgaactgctgcccttgctgtcg
gaagtgagcaaagtggtcagccgcgagggatcgttatccaagacattaaagctggtgctg
gaattgatgcaaaaacacctccaggtcacccgcgcgatgatttccctatacgacgccagc
tgcgatcagatttttatccatgaaagcttcggactgtcccgagaagagagcgaaaaaggg
gtctattaccccggcgaaggcattaccggcaaagtggtggaaaccagacagccgattatc
gtgccggttatcgccgacgagccgttatttctcaatcgtaccggcagttgggatagaaac
ctggatagccgtctttcctttatctgcgtgcccatcatgcgcggcatgaaagtcatgggc
accatcggggtagagcgcttatacaataaccggcaactgctgcacctcgatctcgaagtg
ctggggattatcgccaccaccatcgcccaggcggtggagcttcatctgctggagcgggcc
cacaaacaagtgttgcaggcgcaaagcgcccggctgaacagcgaattaaaggaaaagttc
aagccctcgaatattatcggcaattccaaagccatgcagtctgtttacatgatgattgat
aaggtcagccatgcccgcaccacggtgctgattctgggtgaaagcggcgtgggtaaagag
cgggtggccagcgccattcactacaacagcagctgcgcccacgggccctttatcaaattc
aactgcgcctcgctgccggaaagcgtgattgaaagcgagctgttcggccatgaaaaaggc
gccttcaccggtgcggtggcgcgccgggccggccgcttcgaagaggcccatggcggcacc
ctgttcctggacgaagtgggtgagctctctccggcggtacaggcgaaactgttgcgggtc
attcaggaacgctgtttcgaacggctcggcagtaatgaatccatcaaggtgaatgtacgt
attctggcggccacccattgcgatttgaccgaaatggtggaaaaaggcaccttccgcgaa
gatctgttttatcggctgaacgtgtttccgattaccatcccgccgctgcgggaacggggt
aacgatattctgctgctcgccgagcatttcaatgcctatttcgccaaggagcagcaggtg
gacgtccccaccatcgccacgccggcgctgaatttgctgctgagctacgattggccgggc
aatgtgcgggaattggaaaacctgatggagcgggcggtactgctggcggagggcggcgtg
atccacagctacaacctgcctaacggcctgcagcccgccgtgctgggtgaactcggcggc
cagtccggcctggaagcgcggttatccctgatggaatacgaaataatcgtcgagtccctg
tcgcgccatcaagggaacatgtccaaggcagcggcgcaattgggcctgacccggcgcatg
ctcggtttgcgcatggcaaagtaccggctcaattataaagattaccggtgcggaggttaa
DBGET
integrated database retrieval system
