Sodalis ligni: GTU79_00980
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Entry
GTU79_00980 CDS
T08321
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
slig
Sodalis ligni
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slig03021
]
GTU79_00980 (rpoH)
Transcription machinery [BR:
slig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GTU79_00980 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KORA
IF2_N
HTH_10
HTH_3
UCR_14kD
Motif
Other DBs
NCBI-ProteinID:
QWA11442
LinkDB
All DBs
Position
225364..226221
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AA seq
285 aa
AA seq
DB search
MIKDMQALALVPQGSLEAYIRAANAYPMLTAEEERSLAEQLHYQGDLEAAKRLILSHLRF
VVHIARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
WRIVKVATTKAQRKLFFNLRKTKQRLGWFNQAEVEMVAQELGVTSKDVREMESRMAAQDM
TFDPTPDEDVREGQSMAPMLYLQDKSSDFADGIEEDNWDDHAADKLGLALEGLDERSQHI
IRARWLDDDNKTTLQELADKYGVSAERVRQLEKNAMKKMRMAIES
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagatatgcaagctttagccctggttccccaaggcagtctggaagcctacatc
cgggcagccaatgcctatcctatgcttacggcggaggaagagaggtctttggctgaacaa
ctgcattatcagggcgatttggaggcggccaagcggcttatcctgtctcacctgcgcttt
gtcgtccatatcgcgcgtaattattccggttatggtctgccgcaggcggatttaatccag
gaaggcaatatcggccttatgaaagcggtgcgccgcttcaatcctgaagtaggggtccgg
ctggtttctttcgccgtgcactggattaaagctgaaattcacgaatacgttctgcgcaac
tggcgcatcgtgaaggtggccactaccaaggcccagcgcaagctgttcttcaatttgcgc
aaaaccaaacagcgcctgggctggttcaatcaggccgaagtcgagatggtggcgcaagaa
ctcggcgtcaccagtaaagacgtgcgtgaaatggaatcgcgcatggcggctcaggacatg
acctttgatccgaccccggatgaagatgtccgcgaggggcaatccatggccccgatgctc
tatttgcaggataagtcttccgatttcgccgacggcattgaagaagacaactgggatgat
catgcggcggacaagctcggcctggcgctggaaggcctggatgagcgcagccagcatatt
atccgcgccagatggctggatgacgacaacaagaccacgctgcaggaactggcggataaa
tacggcgtttctgcggaacgcgtgcgccagctggaaaaaaacgccatgaaaaaaatgcgg
atggcgatagagtcgtaa
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