Sodalis ligni: GTU79_04965
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Entry
GTU79_04965 CDS
T08321
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
slig
Sodalis ligni
Pathway
slig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GTU79_04965 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slig03400
]
GTU79_04965 (recD)
Enzymes [BR:
slig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GTU79_04965 (recD)
DNA repair and recombination proteins [BR:
slig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GTU79_04965 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
NAT10_TcmA_helicase
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
UvrD-helicase
AAA_22
PhoH
SLFN-g3_helicase
AAA_16
nSTAND3
FtsK_SpoIIIE
T2SSE
AAA
AAA_28
NTPase_1
AAA_17
SRP54
Motif
Other DBs
NCBI-ProteinID:
QWA12121
LinkDB
All DBs
Position
1066142..1068001
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AA seq
619 aa
AA seq
DB search
MNSLIEQAQQLRLWRPLDIQFARMLAAPDEIAVMLACACLSADAGDGHVCLPLSRLLPEG
LFDGRYPELARRAWGLAGEPSLADWREILLASPAVSDGSRPTPLVLDNQRLYLQRMWQNE
CRVAEFFNAVRPADLADEAGIRQVLQRFFPAFEGAPDWQKVAAAVAVSHPVSLISGGPGT
GKTTTVAKILASLVVLGQGKRMRIQLAAPTGKAAARLSESLGDALDALRLDEEQKRLFPP
EAVTLHRLLGAQPNSQRLRYHRGNPLHVDVLVVDEASMVDLPMMANLIAALPAQAKVIFL
GDRCQLASVEAGAVLGDICYFAEKGYSAARNQQLARLTGCALPPCNDGTGPAVGDSLCLL
QKSYRFDDGSGIGRLANAVNAGDTAGSLALLHAGRDDDVRYAPVRDGDDYRRLLEGAVAG
YRDYLSRVGANESPAVILKAFNRFRLLCALREGPFGITGLNSRIEQALSRAGLINPPADS
LAKGYAGRPVMIVRNAPSLGLSNGDIGIMLADEASELRVYFSLPDGTPKAVPLSRLPEHE
TAFAMTVHKSQGSEFLHTALVLPNQLLPVLTRELVYTAITRARRSLSLYANDDVLSYAIA
TPTQRRSGLIDRLRKGAAG
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaattcactcattgaacaggcgcagcagcttaggctctggcggccgttggacatccag
ttcgcccgcatgctggcggcgccggacgaaatagccgtcatgctggcctgcgcctgcctt
agcgccgacgccggcgacggacacgtctgcctgccgttgagccgcctgttgcccgaggga
ttgtttgacggccgttatcccgaactggcccgccgggcctgggggcttgccggcgaaccg
tccctggcggactggcgggagatattgctggcctcgccggcggtaagcgatggttccagg
cccacgcccctggtactggataaccagcggttatatctgcagcgcatgtggcaaaacgag
tgccgggtggcggaatttttcaacgccgtccggcccgcggacctggcggatgaagccgga
atccggcaggttttgcagcgctttttccctgctttcgagggggcgccggactggcagaag
gtagcggccgcggtggcggtcagccatccggtgagtctgatttccggcggacccggtacc
ggcaaaaccacgacggtggctaagatactggcatccctggtggtgctggggcagggcaag
cgcatgcgcatccagctggcggcgcctaccggcaaggccgcggcgcgcctgagcgaatcc
ctgggagacgccctggacgccctgcggcttgacgaagagcaaaagcggctgtttccgccg
gaagcggtgacgttgcatcgcctgctgggggcgcagcccaacagccagcgtttgcggtac
caccggggcaatccgctccacgttgatgtattggtggtggatgaagcctcaatggtagat
ctgccgatgatggccaatctgattgccgcgctgccggcgcaggccaaggtgatttttctc
ggtgaccgctgtcaattggcctcggtggaagcaggcgcggtactgggggatatttgttat
ttcgcggaaaagggctacagcgcggcccgcaaccaacagctggcgcggttaaccggctgt
gccctgcccccttgcaacgacggcacgggacccgccgttggggacagcctgtgcctgctg
caaaaaagctaccggttcgatgatggttcgggcatcggccggctggccaatgccgtcaat
gccggcgataccgccggttccctggcgttattgcacgccggcagggatgacgatgtccgc
tatgcccccgtgcgggacggtgatgactaccggcgcctgctggaaggggctgtggcaggc
tatcgggactacctgtcgcgggtcggggccaatgaaagcccggcggttatcctcaaggcg
ttcaaccgcttccggctgctctgcgccctgcgggaagggccgttcggcatcaccggcttg
aacagccgcatcgagcaggccctgtcccgggccggcctgataaatcctccggcggattct
ctggccaagggctatgccggacgcccggtcatgatcgtgcgcaatgctccttcccttggg
ctctccaatggcgatatcggcattatgcttgccgatgaggcgtcggaattgcgggtctat
ttctccttgcccgacggtacgcccaaggcggttcccctaagccggttgcccgagcatgag
accgctttcgccatgacggtgcacaaatcccaggggtcggaattcttgcataccgcgctg
gtgctgcccaatcagttgttgccggtgttgacgcgggaactggtctataccgccatcacc
cgggcccgccggtctttgtccctttatgccaacgatgatgtattgagctacgccatcgcc
acgccgacccagcggcgcagcggacttatcgatcgcttacggaaaggggcggcgggctaa
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