Sodalis ligni: GTU79_10560
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Entry
GTU79_10560 CDS
T08321
Symbol
treR
Name
(GenBank) trehalose operon repressor TreR
KO
K03485
LacI family transcriptional regulator, trehalose operon repressor
Organism
slig
Sodalis ligni
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slig03000
]
GTU79_10560 (treR)
Transcription factors [BR:
slig03000
]
Prokaryotic type
Helix-turn-helix
LacI family
GTU79_10560 (treR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LacI
Peripla_BP_1
Peripla_BP_3
HTH_3
HTH_31
HTH_IclR
HTH_7
HTH_23
MarR_2
HTH_Tnp_ISL3
CENP-B_N
HTH_Crp_2
AAA_18
HTH_26
Peripla_BP_4
HTH_AraC
MarR
HTH_28
HHH
TrmB
HTH_17
Motif
Other DBs
NCBI-ProteinID:
QWA13062
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All DBs
Position
2250312..2251268
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AA seq
318 aa
AA seq
DB search
MEPLQNRLTIKDIARLSGVGKSTVSRVLNNESKVSRQTRERVEAVIREYGFVPSKSAQVM
RGQSDKIIGIIVTRLDSPSENQAVRAILPLLYEQGYDSILMESLLNLDRLKEHLRVLFQR
NVDGVILFGFTGLQNDMLAQWQDKMVVMVREYAGLSSVRYDDAGAVTLLMQRLRRQGHRH
IGYIGVNVSDETTGRLRYEAYLRACGDMQISPAAALGDLGYQSGFHLAGEVITADTTALI
CATDTIALGAIKYLQQHRIALMQMCSIGHTPLLSFLFPDTLSVDLGYSNAGKAAARQLVS
LLNGEPAQGNIIVPCILD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaacctctacagaatcgtctcaccatcaaggatatcgcccgcctgagcggcgtcggt
aaatccaccgtttcacgggtgctgaataatgaaagcaaggtcagccggcaaacccgcgag
cgcgtggaggcggtaatacgcgaatacggttttgtgccgtcaaaatcggcgcaggtgatg
cggggacaaagcgacaaaattatcggcattatcgtcacccgcctcgactccccctcggag
aaccaggcggtgcgggccattttgccgctgctgtacgaacagggctatgactccattctg
atggaaagcctgctcaatctcgaccgtttgaaagaacatttgcgggtactcttccagcgc
aacgtcgacggcgtgatcctgtttggcttcaccgggttgcaaaacgatatgctcgcacag
tggcaggataaaatggtggtgatggtgcgggagtacgccgggctttcctcggtccgctat
gacgatgccggcgcggtcaccctgttgatgcagcgcctgcggcggcaggggcatcgccat
attggttacatcggcgtgaacgtcagcgatgagaccaccggacgactgcgctacgaggcc
tatctgcgggcctgcggcgacatgcaaatctccccggcggcggcgctgggagacctgggc
tatcaaagcggctttcatttggccggcgaggttatcaccgccgacaccaccgcgctgatt
tgcgccaccgacaccatcgcccttggggcgatcaaatatctgcaacagcaccgcatcgcg
ctgatgcagatgtgcagtatcggccatacgccgctgctgagctttttattccccgacacc
ctgtcggtggatctcggctattccaacgccggtaaagcggcggcgcgccagttggtgagc
ctgctcaacggcgagccggcgcagggcaatatcatcgtgccctgcatcctggattga
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