Sodalis ligni: GTU79_14890
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Entry
GTU79_14890 CDS
T08321
Name
(GenBank) PocR ligand-binding domain-containing protein
KO
K27259
AraC family transcriptional regulator, pdu and cob operon regulator
Organism
slig
Sodalis ligni
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slig03000
]
GTU79_14890
Transcription factors [BR:
slig03000
]
Prokaryotic type
Helix-turn-helix
AraC family
GTU79_14890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PocR
HTH_AraC
HTH_18
Motif
Other DBs
NCBI-ProteinID:
QWA13727
LinkDB
All DBs
Position
complement(3205871..3206797)
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AA seq
308 aa
AA seq
DB search
MNSGSFMDSDLINKIAQDFANATNLAVVVVNIHGEEVSDLYHFTPFCQLMRQDPEMSRRC
RMSDRCGGLEASKSNQPCIYRCHSGLTDFSIPLLISGHLVGFVLCGQVRVHDTVTLPSVQ
DCTSRAWQKDYQLTESYEKIPVVDFDRLISSADLLKMIVDNYLKQQLEVVVFKEHGDGPI
ERRTAVPSQHESKMKKALRCIDNHYFEDLRLEDVAAMVYLSPYYFSKLFKKYQGIGFNAY
VNQLRMQSARQMLEQSDWPIATIARNLGFSQASYFCKLFRQTYRITPQAYREQRFSPPEN
KDIVALFN
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgaattccggcagtttcatggattcagatttgataaataaaatcgcgcaggatttcgct
aatgccaccaatctggcggttgtggtggtgaatattcacggcgaggaagtctcggattta
tatcacttcacccctttttgtcaattaatgcgccaggatccggagatgagccggcgctgc
cgtatgagcgacaggtgcggcggactggaagcgtcaaaatccaatcagccctgcatttac
cgctgccactccggcctgaccgacttctccattccgctgcttatcagcggacatttggtt
gggtttgtcttatgcggacaggtccgggtgcatgacaccgtaaccctgccttcggtgcag
gactgtaccagcagggcttggcaaaaagattatcaattaactgaaagctatgaaaaaatt
ccggtggtggatttcgatcgcctcatctcctccgctgatttgctgaaaatgattgtggat
aactacctgaaacagcagttggaagtggtggtattcaaggagcacggcgacgggccgata
gaacgccggacggcggttcccagccagcacgagagcaagatgaaaaaagcgttgcgctgc
atcgacaatcattacttcgaggatctgcggctggaagacgtggcggcgatggtctacctc
agtccctattatttcagcaaactgttcaagaaataccaggggatcggcttcaacgcttat
gttaatcaattgcgtatgcaaagcgcccggcagatgcttgaacaaagcgattggcccatc
gccactattgcccgtaatctcggattttctcaggcaagctacttttgcaagttatttcgc
caaacctaccgtattactcctcaggcctatcgtgaacagcgcttttcgccgccggaaaat
aaagatatcgttgctttatttaattaa
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