Sodalis ligni: GTU79_15870
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Entry
GTU79_15870 CDS
T08321
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slig
Sodalis ligni
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slig03016
]
GTU79_15870 (rnd)
Enzymes [BR:
slig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GTU79_15870 (rnd)
Transfer RNA biogenesis [BR:
slig03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GTU79_15870 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QWA08987
LinkDB
All DBs
Position
complement(3415319..3416473)
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AA seq
384 aa
AA seq
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MLNYRLITTDIDLQQICELARRHERVALDTEFVRTRTYYPQLGLIQLYDGQNLSLIDPLA
IGQWQPFVDLLADREVVKILHACSEDLEVFLHAFSQLPTPMVDTQVLAAFNGRPLSCGFA
ALVAEYQQVVLDKSESRTDWLARPLSEKQCEYAAADVYWLLPMAARLIEETAEAGWSEAA
RHECEALCRRRQEIVDPELAYRDIGNAWQLRTRQLACLQKLASWRLRKARERDMAVNFVV
REENLWQVARYMPGSLGELDQLGLSGPEIRYHGKMLLSLVQQTAALPEEQWPAPLVNIID
QPGYRALFKRIKEFILQVSQQSGLSVELLASRRQINQLLSWHWHLIPDQKSPELLSGWRE
QLFGVALRELLARDGETDATSSVL
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
gtgttaaattaccgattgatcaccaccgatatcgatttacagcaaatctgcgaacttgcc
cggcgccacgagcgggttgcgctcgataccgaatttgtccgtacccgaacctactatccg
cagttaggcttgatccagctctacgacggccagaatttatcccttatcgatccgctggcg
ataggacaatggcagccttttgtcgatttactggcagatagggaagtggttaagattctt
catgcctgcagcgaagatcttgaagtgttcctgcatgcgttttcccaattgccgacgccg
atggtcgatacccaggttctggccgcctttaacggccggcctctttcctgtggtttcgcc
gccctggtggcggagtatcagcaggtcgtgctggataaaagcgagtcccgtaccgactgg
ctggcgcgtccgctgagcgagaagcagtgcgaatatgccgccgcggatgtgtattggctg
ctgccgatggccgcgcgcctgattgaggaaaccgccgaggcaggctggagcgaagcggcc
cggcatgagtgcgaagccctatgccggcggcgccaggagattgtcgatcccgaactggct
tatcgcgatatcggtaatgcctggcaattacgtacccgccagctggcgtgcttgcaaaaa
ctggcctcctggcgcttgcgcaaggcgcgcgagcgggacatggcggtgaattttgtggtg
cgggaagaaaacctgtggcaggtggcgcgttatatgccgggttccctgggtgaactggat
cagttgggtttaagcgggccggaaatccgttaccatggcaaaatgctgctgagcctggtg
cagcaaacggcggcgctgccggaggagcagtggccggcgccgctggtaaacattatcgac
cagccgggctatcgagccctgttcaagaggatcaaggagttcattctgcaggtcagtcag
caatcggggctcagcgtggaattattggcgtccaggcggcaaatcaatcaattgctcagt
tggcattggcatctgattcccgatcaaaaatcgccggaactgttgagcggctggcgtgaa
cagctctttggcgttgcgctgcgggaactactcgcgagagacggtgaaacagacgcgaca
agctctgtactgtaa
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