Sodalis ligni: GTU79_17180
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Entry
GTU79_17180 CDS
T08321
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
slig
Sodalis ligni
Pathway
slig02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GTU79_17180 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slig03000
]
GTU79_17180 (nifA)
Transcription factors [BR:
slig03000
]
Prokaryotic type
Helix-turn-helix
Other families
GTU79_17180 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
GAF_2
Mg_chelatase
AAA_2
AAA
HTH_23
AAA_16
HTH_1
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
QWA09172
LinkDB
All DBs
Position
3691825..3693408
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AA seq
527 aa
AA seq
DB search
MNNLPIADRVSRHFDLSRQFTALHKISVTLSRSLETGQTLLAIIRALYENADMQYGMVCL
FDKARSALFIEALYGADSEMEKKCKNVRYRIGEGILGTVMSQRRSLALPRISDDPRFLDR
LNLYDYSLPFICVPIPGSDGIPLGVLAAQPMAAGEDQLPAATRFLEMVANLICQTVRPVE
HPCDVTGAPEQQRGTPRPLVKQRYGFDNMVGSSRSMRRIFDMIHQVAKWDTTVLVRGESG
TGKELIANAIHYDSPRAREPFVKFNCVALPDTLLESELFGHEKGAYTGAVRQRKGRFELA
DGGTLFLDEIGESSLSFQGKLLRILQEGEMERVGGDTTIKVNVRIIAATNRNLEEEVQSG
NFREDLYYRLNVMQINLPPLRKRQEDIVELTQFLIAKLAAKQGRDLRISEGALCLLKNYS
WPGNVRELENCLERASVMSKEGLIDRNIIVSNQRTPARQAIQALRRNLPHPQSAEDQDDD
DLDDRQRLIAALEKSGWVQAKAARLLGMTPRQVAYRIQNLNIDIPRL
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaataatctccccatcgccgatcgggtatcacggcattttgatctctcccggcagttc
accgcactgcataaaatcagcgtaacgctcagccgctcgctggaaacgggacaaacactc
ctggccataatccgggcgctgtatgaaaacgccgatatgcagtacggcatggtttgcctg
ttcgataaagcccgcagcgcattatttatcgaagcgttatacggtgccgatagtgaaatg
gagaaaaaatgcaaaaatgtgcgctatcgcatcggcgaaggcattctggggacggtaatg
agccagcggcgttcactggccttgccgcggatttcggacgatccgcgctttcttgaccgg
cttaatctgtatgattacagtctgccgtttatctgcgtgccgatcccgggttcggacggc
atcccgctgggggtgctggcggcacagccgatggcagcaggcgaggatcaactgccggcc
gctacccgttttctggaaatggtggctaatttgatttgccaaaccgtccggccagtggaa
cacccgtgtgatgtaaccggcgccccggaacagcaaaggggcacaccgcgccccttggta
aagcagcgatacggcttcgacaatatggtgggcagtagccggtcgatgcggcgaattttc
gacatgatccaccaggtggccaaatgggacaccaccgtcctggtacgcggcgaaagcggc
accggtaaagagcttatcgctaacgcgattcactatgattcaccccgcgctcgcgaacct
tttgtcaaattcaactgcgtggcgttgccggataccttgctggaaagcgaattattcggt
catgagaagggagcatataccggcgcggtacgtcagcgtaaagggcggtttgaactcgcc
gacggcggtacgctgtttttggatgaaatcggtgaaagcagcctctctttccaggggaaa
ttactgcgtattttgcaagaaggggaaatggagcgcgtcggcggcgataccactatcaaa
gtcaacgtgcgtattatcgccgccactaaccgtaatctggaagaggaagtgcaaagcggt
aacttccgggaagatctctattaccgcctgaatgtcatgcagattaacttaccgccgctg
cgcaaacggcaggaagacatcgtcgagctgacgcagtttctcattgctaaactggcggca
aaacaggggcgggatctgcgcatcagcgagggcgcgctgtgtttgctaaagaattatagc
tggcccggcaacgtccgcgagctggagaactgcctggagcgcgcgtcagtgatgtcaaaa
gaaggcttgattgaccgcaacatcattgtgtccaatcagagaacaccggcacgtcaggcg
atccaggccttacggcgtaacctgccgcacccgcaatctgccgaagaccaggacgatgac
gatttggacgatcggcagcggctgattgccgcattggaaaagtccggttgggtccaggcg
aaagctgcccgtttgttgggcatgactccgcgtcaggttgcctaccggatacagaacctg
aatatcgatataccacggttatga
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