Sodalis ligni: GTU79_18190
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Entry
GTU79_18190 CDS
T08321
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
slig
Sodalis ligni
Pathway
slig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GTU79_18190 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slig03400
]
GTU79_18190 (sbcB)
Enzymes [BR:
slig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GTU79_18190 (sbcB)
DNA repair and recombination proteins [BR:
slig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GTU79_18190 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GTU79_18190 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GTU79_18190 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Spt46
Motif
Other DBs
NCBI-ProteinID:
QWA09324
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All DBs
Position
3903220..3904641
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AA seq
473 aa
AA seq
DB search
MADTKRQPTFLVHDYETFGTHPALDRPAQFAGIRADLEFTPLGDPQVFYCRPADDYLPDP
EAVLITGITPQQAAREGVNEAEFARRIHAMFSVPDTCILGYNNIRFDDEVTRNIFYRNFY
DPYAYSWQQGNSRWDLLDVMRACYALRPEGIHWPQNDDGLPSFRLEHLTRANGVEHTHAH
DAMADVHATLAMARLARQAQPKLFDYLYRHRGKQSLKALIDIAAMKPLVHVSGMFGAGRG
NTAWIAPLAWHPDNQNALIVCDLAGDMSVLLDLDADRLRTLLYTRRDQLGEQSPVPIKLV
HINKCPVLAPANTLRPEDAQRLGIDRKRCLDNLLILRQHAEVREKVLAIFSEAEPFVPSQ
DVDAQLYNGFFSDADRTAMGIILETDPVNLPALDISFVDGRLEELLFRYRARNFPHTLDD
SEQQRWLAYRKNVFSPEKLQTYVATLERLYAEHQDNENHLRLLKALFDYLQQL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacaaaaagacagccgacctttctggtgcatgattacgagaccttcggcacg
cacccggcgctggatcgcccggcccagtttgccggcatccgggccgatctggagttcacc
ccgctgggggatccgcaggttttttactgccgtccggcggacgattacctgcccgacccg
gaagcggtgctgattaccggcatcacgccgcagcaggccgcccgcgagggagtgaacgag
gcggagttcgcccggcgtatccatgctatgttcagcgtgccggatacctgcatcctcgga
tacaacaatatccgcttcgatgacgaagtgacgcgcaatatattctaccgcaacttctat
gatccctatgcctacagctggcagcagggaaattcccgctgggatctgctggatgtgatg
cgtgcctgttatgctctgcgtccggaaggcatccactggccgcagaacgatgacggcttg
cccagttttcgtttggaacacctgacgcgggccaacggcgtggaacatacccatgcccat
gacgccatggcggatgtccatgccaccctggccatggcccggctggcacgccaagcgcag
ccaaagctgttcgattatctctaccgtcaccgcggcaagcagtccctgaaggccttgatt
gacatcgccgcgatgaaaccgctggtgcatgtatcgggcatgttcggcgccggacgcggc
aataccgcctggatagcgccgctggcctggcacccggataaccagaacgcattgattgtc
tgcgatctggccggcgacatgtcggttttgctggacctggatgcggaccggctgcggacc
ctgctctatacccgccgggatcaactgggggagcaatcgccggtgcccatcaagctggtg
catatcaacaagtgcccggtgctggcccccgccaataccctgcggccggaggacgcgcag
cggctgggtatcgatcggaagcgttgcctggataacctgctcattttacgccagcatgcc
gaagtgcgggaaaaggttttagcgatatttagcgaggcggaaccttttgtcccttcgcag
gatgtggatgcccagctgtataacggctttttcagcgacgccgaccggacggcgatgggg
attatcctggaaaccgatccggtcaatctgccggcgctggatatcagctttgtcgacggc
cggctggaagagctgctgtttcgctatcgggcgcgaaattttccccacaccctggatgac
agcgaacagcagcgctggctggcctatcgcaagaatgtgttcagcccggaaaaattacaa
acctacgtcgcgaccctggaacggctttatgcggaacaccaggacaatgaaaaccacctt
cggctgttaaaggcgctgtttgactatctgcagcagctttaa
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