Sodalis ligni: GTU79_22850
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Entry
GTU79_22850 CDS
T08321
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
slig
Sodalis ligni
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slig03019
]
GTU79_22850 (hrpB)
Enzymes [BR:
slig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GTU79_22850 (hrpB)
Messenger RNA biogenesis [BR:
slig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GTU79_22850 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_22
wHTH-PRTase_assc
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QWA10072
LinkDB
All DBs
Position
complement(4889773..4892232)
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AA seq
819 aa
AA seq
DB search
MLTLNGDDVTSLPVSAVVDELLAALRDAGQVLLHAPTGAGKSTWLPLELLRRGGLPGRIV
MLEPRRLATKNIALRLASQLGESVGATVGYRMRAESRIGGGTRLEVVTEGILTRMLQQDP
ELPGVSLVILDEFHERSLQADLALALLLDVQQGLRGDLRLLIMSATLDDERLLSLLPGAP
VIRSVGRSFPVERSYHPLPSQGWPEPAIAAEVNRMLRLHSGSLLLFLPGVAEIRRVRDLL
AERVAEDVDLCPLYGALSLDEQQRAIRPAEEGRRKVVLATNIAETSLTIEGIRLVADSGL
ERVADFDARSGLSRLQTQRISQASMAQRAGRAGRLAPGICWHLFSQPQAERAPEYGQPEI
LHSDLCGMYLELLLWGCRDASELRWLDSPPEPMMAAARDTLRQLGAIDDAGRLTTVGRAM
GRLGCDPRLAAMLCHGEGHDDGLATAALLAAIIEEPPRSGSPDLRDYLARPQSHWLRRAK
QLAGRLSPRWGTPDGGRAEALLAWGFRDRIARRRNLSGRYLLANGLGAALPPDEALSAAE
WLIAPGLLQVSRNPDATIRLAMPLDIAMLIARFPQWITVETAMRWDREKGSLRVVRREQI
GSLVLLEQPQARPSAELMQQALLNWVAEQGLSVLNWDEPAQQLRQRLLCAREWLPETDWP
AVDDAALLAELPRWLQPSLAGVHDVRALQQVNLGEALMRLLDWPQRQRLESALPSHYTVP
TGSRLPVRYRHGEPPVLAVRMQEIFGEQSTPLLAEGRVGLVLELLSPARHPLQKTGDLAA
FWRGAYRDVQKEMKGRYPKHVWPDDPGRAAPTRRTKKYQ
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgttaacccttaacggagacgacgtgacgtcattaccggtcagcgccgtggtggatgaa
ctgctggcggcgttgcgagacgccggccaggtgctgctgcatgcccccaccggcgccggc
aaatccacctggctgccgctggaattactgcgccgtggcgggctgccggggcgaatagta
atgctggagccccggcggctggccaccaaaaatattgccctgcggctggcgtcgcagctg
ggggaaagcgtcggcgcaaccgtgggctaccgtatgcgcgccgagagccgcatcggcggc
gggacccggctggaggtggtgaccgagggcatactgacccgaatgctgcagcaggacccc
gagctgcccggcgtgtcgctggtgatcctggatgagttccatgagcgcagcctgcaggcg
gatttggcgctggccctgctgcttgatgtgcagcaggggttgcgcggggatctgcgtttg
ttgatcatgtccgccacccttgacgatgagcgtctgctgtcgctgctgcccggcgcgccg
gttatccgctccgtcgggcgcagtttcccggtggagcgctcgtaccatccgctgccgtcc
caggggtggccggaaccggccatcgccgccgaggtgaaccgcatgctgcggctccattcc
ggttcattgctgctttttttacccggcgtcgccgagatacgccgcgtgcgggatttgctg
gcggagcgggtggcggaggatgtggatttatgtccgctgtacggcgcattgtccctggac
gagcagcagcgggccatccgcccggcggaggagggacgccgtaaagtagtgctggccacc
aatatcgccgagaccagcctgaccattgaggggatccggctggtggcggacagcggtctg
gagcgggtagccgatttcgatgcccgcagcggcctgagccggctgcagacccagcgcatc
agccaggcttccatggcgcagcgcgccggccgcgccggccggctggcgccgggcatctgc
tggcatctgttcagtcagccgcaggccgagcgggcgccggaatacggtcagccggaaatc
ctgcacagcgacctgtgcggcatgtatctggaactgctgctgtggggctgccgggacgcg
tcggaactccgctggcttgacagtccgccggagccgatgatggccgcggcccgcgacacc
ctgcggcaattgggcgctattgatgatgccggccggcttaccaccgtcgggcgcgctatg
gggcggctgggctgcgatccgcgcctggcggccatgctgtgccacggagaaggccacgac
gacgggctggccacggccgcgctgctggcggcgattatcgaagagccgccccgcagcggt
tcccccgatctgcgcgattacctggcccgcccgcaatcccactggctgcggcgcgccaaa
cagctggcgggccggctgtcgccgcgctggggcacgccggacggcgggcgggcggaagcg
ctgctggcatggggattccgggatcgcattgcccggcgcagaaacctttcggggcgttat
ctgctggccaacgggcttggggccgcgctgccgcccgacgaggccctgtccgccgccgag
tggctgattgcgccgggtctgctgcaggtgagccgtaatcccgacgccaccattcggctg
gcgatgccgctggatattgctatgctcatcgctcggtttccacagtggataaccgtggaa
accgccatgcgctgggaccgggagaaaggcagtttgcgggtggtgcggcgggaacagatc
ggcagcctggtattgcttgagcaaccgcaggcaaggccgtccgccgagctgatgcagcag
gcgctgttgaactgggtcgcggagcagggactgtcggtgctcaattgggatgagccggcg
cagcagcttcgccagcgcctgctgtgcgcccgtgagtggctgccggaaacggactggccg
gcggtggacgatgccgcgctgctggcggagctgccgcggtggttgcagccctccctggcc
ggcgtgcatgatgtgcgtgccctacagcaggtaaatcttggcgaggcgctgatgcggcta
ttggactggccgcagcgccagcggctggagagtgcattgcccagccattacactgtgccc
accggcagccggctgccggtgcgttatcgccacggcgagccgccggtgctggcggtgcgg
atgcaggagattttcggagaacagagcacgccgctgctggcggaaggccgcgtcgggctg
gtgctggaactgttgtcgccggcgcggcatccgttacagaaaaccggcgatctggcggca
ttttggcggggcgcttaccgcgacgtgcaaaaagagatgaaaggccgctatcccaaacat
gtatggccggatgaccccggccgggcggcgccaacccggcgcaccaagaaatatcagtaa
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