Sodalis ligni: GTU79_23295
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Entry
GTU79_23295 CDS
T08321
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
slig
Sodalis ligni
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slig03021
]
GTU79_23295 (rapA)
Transcription machinery [BR:
slig03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
GTU79_23295 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QWA10150
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All DBs
Position
4990026..4992932
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AA seq
968 aa
AA seq
DB search
MPFKSGQRWISDTESELGLGTVVAVDNRMVTLLFSAAGENRLYARADAPVTRVIFNPGDT
VTSHEGWQLLIESVEEEDGLLTYIGTRLDSGQADTVLREVMLDSKLTFSKPQDRLFAGQI
DRMDRFVLRYRARKFHSEQFRQAWNGLRGIRANLIPHQLHIASEVGQRYAPRVLLADEVG
LGKTIEAGMIIHQQLLTGRADRVLIVVPESLLHQWLVEMLRRFNLLFSLFDEERYAEAMQ
DSENPFETEQLVLCSLDFVRRNHERLEKLADAEWDLMVVDEAHHLAWSEEAPSREYQVIE
QLARSIPGILLLTATPEQLGLQSHFARLRLLDPDRFHDYAEFVAEQQRYRPVADAVTLLL
NGKDLTDEAKNLLGEMLSEQDIEPLLAVTNGDDTRARSARRELTAMLMDRHGTSRVLFRN
TRQGVKGFPRRLLHQIKLPLPAQYQTAIKVAGIMGGKQAPDERARNMLYPEHIYQQFEGQ
SATWWNFDPRVEWLLEFLLQNRQEKVLVICAHADTALQLEQVLREREGIRAAVFHEGLSL
LERDRAAAYFASEDDGAQILLCSEIGSEGRNFQFAHQMVMFDLPFNPDLLEQRIGRLDRI
GQTHDIEIFVPYLEQTAQAILIRWYHEGLDAFEHTCPTGRVQYDQAYATLIGYLGEPAQQ
EGLNEFILECRKQHDRLKLQLEQGRDRLLEQHSNGGEQAQALAQAIAAQDSDPQLVNFAL
NLFDIVGINQEDRSDSLIVLTPSDHMLVPEFPGLPEEGCTITFNREQALAREETQFISWE
HPIIRNGLDLVLSGDSGTSAVSLLKNKALPAGTLLVELIYVVEASAPRKLQLNRFLPATP
IRLLLDQNGNDLASQVEFEHFNRQLNAIKRHTAGKLVSAVHQEIHKLLQKGEALAAEQAR
TLIHSARQQADESLSAELNRLEALKAVNPAIREDELETLAYNREHALTQLNQANWRLDAI
RLIVVTDQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcaaatcaggtcaacgctggatcagcgatacggaaagtgaattgggattggga
accgtggttgccgtggataaccgcatggtcaccctgctgttttccgctgccggtgaaaat
cgtctttatgcccgggccgatgctcccgtcacccgggtcattttcaatccgggcgatacc
gtaaccagccatgaaggctggcaactactgatagaatccgtggaggaagaggacggcctg
ttaacctatatcggcacccggttggatagcggccaggccgacaccgtgctgcgggaagtg
atgctggacagtaaactgaccttcagcaaaccgcaggacagactgtttgccgggcaaatc
gatcgaatggaccggttcgtcctgcgttatcgggcgcgaaaatttcatagcgaacaattt
cgccaggcctggaacggtttacggggcatccgcgccaacctgatcccccatcagttgcat
atcgcctcggaagtggggcagcgttacgcgccgcgggttttgctggcggacgaagtgggc
ttgggcaaaaccatcgaagccggcatgataatccatcagcagttgctcaccggccgcgca
gaccgcgtgctgatcgtggtaccggagtcattattgcaccaatggctggtggaaatgctg
cgccgcttcaacctgctgttttccctgtttgacgaagagcgctacgccgaagcgatgcag
gacagcgagaatccctttgaaaccgaacagctggtgctgtgttcgctggactttgtgcgc
cgcaaccatgagcggctggaaaagctggccgacgctgaatgggatctgatggtggtggac
gaagcccatcatctggcctggagcgaagaggctcccagccgggaataccaggtgatcgag
cagctggcccgcagtattcccggcatcctgctccttaccgcgacgcccgaacagctgggg
ctgcaaagccacttcgcccgcctgcggctgctggatcccgatcgcttccatgattacgcc
gaattcgtggcggaacagcagcgttaccggccggtggcggatgcggtcaccctgttgctt
aacggcaaggatttaaccgacgaggcaaaaaatctgctgggggaaatgctaagcgaacag
gatatcgagccgctgctggcggtgaccaacggcgacgatacgcgcgcccgcagcgcccgc
cgcgagctgacggccatgctgatggatcgccacggcaccagccgggtgctgttccgcaat
acccggcagggcgttaaaggctttccgcgccggctgctgcatcaaatcaagctgccgctg
ccggcccaataccagaccgccatcaaagtggccggcatcatggggggcaaacaggcgccg
gatgagcgggcgcgcaatatgctttaccctgaacatatttatcagcaattcgaaggccag
agcgccacctggtggaacttcgacccccgcgttgaatggctgctggaattcctgctgcag
aaccggcaggaaaaagtactggtgatctgcgcccacgccgataccgccctgcaattggaa
caggtgctgcgggagcgtgaaggcatccgcgccgcggtattccacgaagggctgtcctta
ctggaacgggaccgcgccgccgcctattttgcctcggaagatgacggcgcccagatcctg
ctctgttcggaaatcggctccgaagggcgaaatttccagtttgcccatcaaatggtgatg
tttgatttgccgtttaatccggatttgctggagcagcgcatcggccggcttgatcgcatc
ggccagactcatgacatcgagatttttgtaccctatcttgagcagaccgcccaggcgata
ttgatccgctggtatcatgaaggattggatgcgtttgaacatacctgccccaccggccgc
gtccagtacgatcaagcctacgccacccttatcggctatttgggcgaaccggcgcagcag
gaaggactgaacgaatttatccttgaatgccgcaaacagcacgatcggctaaagctgcaa
ttggaacagggacgcgatcgcttgctggaacagcattccaacggcggcgaacaggcccag
gcgctggcgcaagccattgccgcgcaggacagcgacccccaactggtgaatttcgccctc
aacctgtttgatatcgtaggcatcaatcaggaggatcgcagcgacagcctgattgtcctc
accccgtcggatcacatgctggtaccggagttccccggcctgccggaagagggctgcact
attaccttcaaccgcgagcaggcgctggcccgggaggaaacacagtttatcagttgggaa
catcccatcatccgtaacggcctggatctggtattatccggcgacagcggcaccagcgcg
gtatcgctgctgaaaaacaaagcgctgccggcgggcaccctgctggtggaattgatctat
gtggttgaggcatcggccccgagaaaattgcagctgaaccgttttttaccggcaaccccc
atccggctgctgctggatcaaaacggtaacgatctggcatcgcaggtggaattcgaacat
ttcaaccggcagctcaacgccataaaacgccataccgccggtaaactggtgagcgcggta
catcaggaaatacacaagctgttgcaaaaaggcgaagcgctggcggccgaacaggcccgc
accttaatccacagcgccaggcagcaggcggatgagagcctgagcgccgagcttaaccgc
ctggaggcattgaaagcggtgaacccggcaatccgggaagacgagctggagacgctggcg
tataatcgcgagcatgcactaacccaactgaatcaggccaactggcggctggacgccata
cgcctgattgtggtcaccgatcaataa
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integrated database retrieval system
