Sodalis ligni: GTU79_23660
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Entry
GTU79_23660 CDS
T08321
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slig
Sodalis ligni
Pathway
slig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTU79_23660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slig03019
]
GTU79_23660
03009 Ribosome biogenesis [BR:
slig03009
]
GTU79_23660
Enzymes [BR:
slig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTU79_23660
Messenger RNA biogenesis [BR:
slig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTU79_23660
Ribosome biogenesis [BR:
slig03009
]
Prokaryotic type
rRNA helicases
GTU79_23660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_30
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWA10213
LinkDB
All DBs
Position
complement(5068657..5070570)
Genome browser
AA seq
637 aa
AA seq
DB search
MSEVETSFADLGLSTPILNALLDLGYEKPSPIQLECIPQLLAGRDVLGMAQTGSGKTAAF
ALPLLHNIDAELAAPQVLVLAPTRELAVQVAEAISDFAKHMKGINVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAK
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVHGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALEHSGYNSAALNGDMNQALREQTLDRLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLKNI
ERIMKLAIPEVEIPTGELLSQRRLEKFASKVQAQLESSDLDMYRALLAKLQPLEELDMET
LAAALLKMAQGERPLILPPDPVIDRRPRREFRERDERRPESAGAGGERPARRERRDVGEM
DLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDMLSHFT
RTRILNKPMNMQFVGEAQAQPRGERRGGAPRGGFGGGERREGGSAPAGAPARRNFSDRRE
GGASTERRFSRDGQRAPRRDGDSAAAPAGRRRFGSDA
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagttgaaacctcctttgctgatttgggactctccactcccatcctcaacgct
cttctcgatctgggctacgaaaaaccatcgccaatccagttagagtgtatcccgcagttg
ctggcgggccgtgatgtactgggcatggcgcaaaccgggagcgggaagaccgctgcgttt
gctttgcccctattacataatattgatgcggaactggccgctccccaagtgctggttctg
gcgccaacccgtgagttggcggtacaggtcgcggaagcgatttccgattttgccaagcat
atgaaaggcattaacgtggtggcgctatacggcggccagcgttatgacgtccagttgcgc
gccctgcgccaagggccgcaggttgtcgtgggtacgccgggtcgtctgctcgaccatttg
aaacgcggcaccctcgatttatccaaactcagcggtttggtgctggatgaagccgatgaa
atgctgcgtatgggctttatcgaagacgtggaaaccattatggcgcaaatccccgccaag
catcagacggcgctgttttccgccacgatgcctgaggcgattcgccggattacccgtcgt
ttcatgaacgatccgcaggaagtcaggattcagtccagcgtgaccacccgtcccgatatc
agccagagttactggacggtgcacggcatgcgcaagaatgaagcgctggtgcgtttcctc
gaagcggaagatttcgacgccgccatcatcttcgtgcgcaccaaaaacgccacgctggaa
gtggcggaagcgctggagcacagcggttacaacagcgccgcccttaacggcgatatgaac
caggccttgcgtgaacaaaccctggatcgcctgaaggacggtcgtctggatattctgatt
gccacggatgtggcggctcgcgggctggatgtggatcgtatcagcctggtggtgaactat
gatattccgatggattcggaatcctatgtgcaccgtatcggccgtaccggccgtgcgggc
cgcgccggacgcgcgctgctgttcgttgagaaccgcgaacgccgtttgctgaagaatatc
gaacgtatcatgaagctggctattccagaagtggaaatccctaccggcgagttgctcagc
cagcgccgtctggaaaaattcgcctcgaaggtccaggcccagttggaaagcagcgatttg
gatatgtatcgcgccctgctggcgaagcttcagccgctggaagagctggatatggaaacc
ctggccgcggcactgctcaaaatggcccagggcgaacgtccgctgatcctgccgccggat
ccggttattgaccgtcgtccgcgccgtgaattccgcgaacgtgatgaacgtcgcccggaa
agcgctggtgccggcggtgaacgtccggcacgccgtgaacgtcgcgacgtgggtgaaatg
gatttgtaccgcattgaagtgggccgtgacgacggggtggaagttcgccatatcgtgggc
gccattgccaacgaaggcgatatcagcagccggtacatcggcaatatcaagctgttcgct
tcccactccaccatcgaactgccgaagggtatgccgggggatatgctgtcgcatttcacc
cgtacgcgtattcttaacaagccgatgaatatgcaatttgtgggtgaagcccaggcccaa
ccccgcggtgaacgccgtggcggcgcacctcgcggcggtttcggcggcggtgaacgtcgt
gaaggcggcagcgctccagccggcgcgccggcccgccgtaacttcagcgatcgccgtgaa
ggcggagcaagcaccgagcgccgtttcagccgcgacggccagcgcgccccgcgccgtgat
ggcgacagcgccgccgcaccggcaggccgccgccgtttcggtagtgatgcataa
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