Sulfuricaulis limicola: SCL_0036
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Entry
SCL_0036 CDS
T05241
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slim
Sulfuricaulis limicola
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slim03016
]
SCL_0036
Enzymes [BR:
slim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SCL_0036
Transfer RNA biogenesis [BR:
slim03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SCL_0036
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
BAV32361
UniProt:
A0A1B4XC54
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All DBs
Position
complement(36372..37487)
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AA seq
371 aa
AA seq
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MTESLVQDPAALARSCEALRAQAWMALDTEFMRTRTYYARLCLVQVATPEQIACVDTITL
PTIEPLLEMIYAPHTLKVVHAARQDLEVFADIRGAPPAPVFDTQIAASLCGYDDQIGYGA
LVESITGHKLPKLHTRADWETRPLPADQLHYAEDDVRYLRDVYRFLAQKLEALGRTDWLR
EECAALTDPGLYRNDPREAWRRLKQGQSLPPAAQTLLRELAMWRELTAQQHNLPRGWVVA
DTALVEAALVAPTAPEALGRIAGIGGPPARKWGEEILQVIQHGLELKPERLWEEPQRPDR
RQQALYEQLQTRVRAVAAEIKISATLIAPRRELLKLIAGDSSGSLARGWRRALIGEELMQ
LCGNPAAATAT
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatcactggttcaggatccggcggcgctggcacggtcgtgcgaggcattgcgc
gcgcaggcgtggatggcgctggacacggaattcatgcgcacgcgcacctattacgcgcgc
ctgtgcctggtgcaggtggcaaccccggagcagatcgcctgcgtcgataccattaccttg
ccgaccatcgagccgctgctggagatgatttacgcgccgcatacgctcaaggtcgtccac
gccgcgcgccaggacctcgaggtgttcgccgacatccgcggcgcgccgccggcgccggtg
ttcgacacccagatcgccgcctcgctgtgcggttacgacgatcagatcggctacggcgcg
ctggtggaatccatcaccggccacaagctgcccaagctgcacacgcgcgccgactgggag
acccgcccgcttccagcagatcaattgcactatgccgaagacgatgtgcgctacctgcgc
gacgtgtaccggttcctggcgcaaaaactcgaagccctcgggcgcaccgactggctgcgc
gaggaatgcgccgcgctcaccgatcccggactgtaccgcaacgatccgcgcgaggcgtgg
cgccgcctgaagcagggccagtcgttgccgccggcggcgcagacgctgttacgcgaactg
gcgatgtggcgcgaactcacggcgcagcagcataatcttccgcgcggctgggtcgtcgcc
gacaccgcgttggtggaagccgccctggtcgccccgaccgccccggaggcgctcggccgc
atcgccggcatcggcgggccgccggcacgcaaatggggcgaggaaattctgcaagtcata
cagcacggcttggagctgaagcccgaacgcctgtgggaagaaccacagcgtcccgatcgc
cggcagcaggcgttgtacgaacaactgcagacacgcgtgcgtgccgtcgccgcggaaata
aaaatcagcgcgacattgatagcaccgcgccgcgaattgcttaaactcatcgccggcgac
agcagcggcagcctggcgcgcggctggcggcgcgcgctgatcggcgaagaactgatgcag
ctctgcggcaatccggcagcggcgacagccacctga
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