Sulfuricaulis limicola: SCL_0630
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Entry
SCL_0630 CDS
T05241
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCL_0630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_0630
Enzymes [BR:
slim01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SCL_0630
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SCL_0630
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SCL_0630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_SprT
HscB_4_cys
GDPD
Motif
Other DBs
NCBI-ProteinID:
BAV32952
UniProt:
A0A1B4XDT4
LinkDB
All DBs
Position
complement(623188..624003)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGIEPHTVGRTVVRLVVRNPALRWRVTPKLVQEFSGQTIRSVTRRGKYL
LFATDAGAAILHLGMSGSLRVAPCTQAANIHDHVDIVLDNGDCLRLHDPRRFGCLLWTRD
DPQKHKLLRDLGPEPLAADFSGDHLFVKSRRRKRAIRDFLLDSRVLAGIGNIYANEALFA
AGLRPMRAAGRISKDQYARLTQAIRATLNRALKAGGTTLRDFRNGRGEPGYFQLSLNVYG
RGGERCLVCGTAIKAKRLGQRSAFFCPKCQS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactccctgaagttgaaaccactcgccgcggcatcgaaccgcacacggtcggc
cgcaccgtggtccggctggtggtgcgcaacccggcgctgcgctggcgcgtgacgccgaaa
ctggtgcaggaattttccggacagacgattcgctcggtcacgcgccgcggaaaatatctg
ttattcgccaccgacgccggcgcggcgattctccatctcggcatgtccggcagcctgcgc
gtcgcgccctgcacgcaagcggcgaacatccatgaccatgtggacatcgtgctcgacaac
ggcgattgcctgcgcctgcacgatccgcgccgcttcggttgcctgctgtggactcgtgac
gacccgcaaaaacacaagctgctgcgcgatctcggtcctgaacccctggcggcggatttc
agcggcgatcacctgttcgtaaaatcccgccggcgcaaacgcgccatccgcgatttcctg
ctcgacagccgggtgctggccggaatcggcaacatctacgccaacgaggcgctgttcgcc
gccggcctgcgccccatgcgcgcggccgggcgtatcagcaaggaccagtatgcgcggctg
acccaggccattcgggcaacgctgaaccgcgccctgaaagccggcggcaccaccctgcgc
gacttccgtaacggccgcggcgaacccggatattttcagctgtcgctgaatgtctatggg
cgtggcggcgagcgctgcctagtttgcggcacggccatcaaagcgaaacggttggggcag
cgcagcgcgtttttctgcccaaaatgtcagagctag
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