Sulfuricaulis limicola: SCL_0752
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Entry
SCL_0752 CDS
T05241
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slim
Sulfuricaulis limicola
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slim03016
]
SCL_0752
Enzymes [BR:
slim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SCL_0752
Transfer RNA biogenesis [BR:
slim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SCL_0752
Prokaryotic type
tRNA splicing ligases
SCL_0752
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAV33072
UniProt:
A0A1B4XE53
LinkDB
All DBs
Position
complement(742537..743967)
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AA seq
476 aa
AA seq
DB search
MDIALFARHTDYEWEIAPHGAMRVPAVIYADEALIRAMDHKVYEQVCNVATLPGIVKASY
AMPDAHWGYGFPIGGVAAFDPDDGGVVSAGGVGFDISCGVRCLHTGLNTEDVMAVQKMLA
DTLYREIPAGLGSTGAIRLNQSEMDAMLAGGAAWAVKQGHGSAADLDHIEEHGQMRGARP
DCVSEHAKKRQRDEMGTLGSGNHYLEVQKVVRVFDTRAAEAFGIRENDVVVSIHCGSRGL
GHQIGTEFLKEMVTAASHYGIMLPDRELACAPINSPLGENYLGAMRAAINCALANRQILT
HLVREVFSQVIPKARLPLLYDVSHNTCKAEEHVVDGKRRKLYVHRKGATRAFGPGHPDIP
DILRAVGQPVLIGGSMGTGSYILVGTKQGEALSFSSACHGAGRAMSRHQAYKTWKGRQVI
DELAARGILIRSPSGRGVAEEAPGAYKDVSAVVDAADAAGLARKVARLEPLVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgcgctcttcgcccgccacaccgactacgaatgggaaatcgccccccacggc
gccatgcgcgtgcccgcggtgatctacgccgacgaagccctgatccgcgccatggatcac
aaggtgtacgaacaggtctgcaatgtcgccaccctgcctggtatcgtgaaggcgtcttac
gccatgcccgatgcgcactggggttacggctttcccatcggcggcgtggccgccttcgat
ccggatgatggcggcgtggtctcggcgggcggcgtgggcttcgacatctcctgcggtgtg
cgttgcctgcataccggactgaacaccgaggatgtcatggcggtccagaaaatgctggct
gacactttatatagagagattccggcgggtctgggcagcaccggcgccatccgcctgaat
cagtccgaaatggacgcgatgctggcgggcggcgcggcctgggccgtgaaacagggccac
ggcagcgcggccgatctcgatcacatcgaggagcatggtcagatgcgcggcgcgcgcccc
gactgcgtttcggaacacgccaagaaacgccagcgcgacgagatgggcacgctcggcagc
ggcaaccattacctcgaagtacagaaggtcgtgagggtcttcgacaccagggcggcggag
gccttcggcattcgcgaaaacgacgtcgtggtcagcatccattgcgggtcgcgcggcctc
gggcatcagatcggcaccgagttcctgaaggaaatggtaaccgccgcttcacactacggc
attatgcttcccgaccgtgaacttgcctgtgcgccgatcaactcaccgctgggcgaaaat
tatctcggcgccatgcgcgcggccatcaactgcgccctcgccaaccgccagattctcacc
catctcgtgcgcgaggtcttctcgcaggtcatcccgaaagcccgcctgcccctgctttac
gatgtctcgcacaacacctgcaaggcggaggaacatgtcgtggacggcaagcggcgcaag
ctttacgtgcaccgcaagggcgccacgcgcgcctttggcccgggtcatccggatattccc
gatatattgcgcgccgtcggccaaccggtcttgatcggcggttcgatgggcaccggctcc
tatattctcgtcggcacgaaacaaggcgaggcactgtcgttcagctccgcctgccatggc
gccggccgcgccatgagccggcaccaggcgtacaagacctggaagggccgacaggtgatc
gatgaactggcggcgcgcgggatcctgattcgcagcccctccgggcgcggcgtggccgaa
gaggcgccgggcgcctacaaggacgtgtcggccgtggtggacgccgccgacgccgccggt
ctggcacgcaaggtggcgcggctggaaccgcttgtctgcataaagggttaa
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