Sulfuricaulis limicola: SCL_1238
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Entry
SCL_1238 CDS
T05241
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCL_1238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_1238
Enzymes [BR:
slim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCL_1238
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCL_1238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
SWI2_SNF2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAV33551
UniProt:
A0A1B4XFG8
LinkDB
All DBs
Position
complement(1250242..1253727)
Genome browser
AA seq
1161 aa
AA seq
DB search
MESPLKPKFPAGPGDRLVWRGLAGSGRGLAIAVAAAAHAGPLLVVTASSFSAQRLEDEIR
FYAPELPILPFPDWESLPYDLFSPHQDIISQRLETLHRLPVLTRGVVLASVTTLLHRLSP
RDYVSAHSFLLKVGDRLDIQRLREQLTRANYHSVSQVMEAGEFAVRGGLVDLFPTGSHQP
YRLDLFGDQVESIREFDVATQRSGKSIDTIRLLPAREYPLTEESIQHFRQAFRARFEGDP
QKVSLYRDVSRGITPSGAEYYLPLFFPEMANIFDYLPKSTLCLLEAGVTEIAENFWRETG
QRYDEMRHDRERPLLEPPVIFITPAELFSGMEAWPRVEIMDADIAQTGATAQDDREAVIY
GMRPPASLPVDYKSGAPYATLFSYLRDFSGRILLVAESAGRRETLKGLLHENGLPPQDIS
GWRAFLDGTAKLGLTVADLEKGLLLKEPDIAVITEAQLYGERAAQRRRRGRAEREPEAII
RSLAELKPGDPVVHEDHGVGRYLGLQTLDIGDGPAEFLTLEYADGDKLYIPVLALHLISR
YTGTDPENAPLHKLGGEAWEKAKRRALEKAHDAAAELLEIYALRAAREGHSFPPPDEHYQ
SFAGAFPFEETPDQERAIQEVLQDMQTAKPMDRLVCGDVGFGKTEVAMRAAFLAVMGKAQ
VAVLVPTTLLAQQHYQNFQDRFAGLAFRIELLSRVRSQGEQRAILAALADGTVDIVIGTH
RLLQDDVRFQRLGLVILDEEHRFGVRQKERLKKLRSEADILAMTATPIPRTLNLSLSGLR
DISLITTAPEGRLSVKTFISEKNRSVIREACLREIRRGGQVYYLYNEVRTIDKAARELQE
LMPEADIRIAHGQMPEHDLERIMLDFYHQRFNVLVCSTIIESGIDVPSANTIIIERADKF
GLAQLHQLRGRVGRSHHRAYAYLLVPDRRALSEDARKRLEAIESLEELGAGFTLASHDLE
IRGAGELLGETQSGMIDEVGFALYSELLNRAVKSLQAGRLPATDASLHSGAEINLHAPAL
FPENYLPDVHLRLVLYKRLSAARSLSALQELKEEIIDRFGVLPEPGQLLFRATEIKIRAT
PLGIRKIDAGPRGARIEFIEKPDIDPGAVLRLLQSAPRRYKLDGPNRLRILGDLPEVEDR
IKAVMALLDKLSLRAEMAISK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggaatcacccctgaaaccgaagttccccgccggacccggcgaccggctcgtctggcgc
ggtctggccggcagcgggcgcggcctggctatcgccgtcgcggcggcggcccatgccggc
ccgctgctggtcgttaccgccagcagtttttcggcccaacggctggaagacgagattcgc
ttttacgccccggaactgcccattctgccgttcccggactgggaaagcctgccctacgat
ctcttttctccgcaccaggacatcatctcgcagcggctcgagacgctgcaccgcctgccg
gtactgacgcggggggtggtgctggcctccgtgaccacgctgttgcatcgactctcgccg
cgcgactacgtgagcgcgcacagtttcctgctcaaagtcggcgaccggctcgacattcag
cgcctgcgcgaacagctgacacgcgccaactaccacagcgtgtcgcaggtcatggaggcc
ggcgagtttgccgtgcgcggcgggctggtggatctgttccccaccggcagccaccagccc
tatcgcctcgacctgttcggcgatcaagtggagtccatccgcgaattcgatgtcgccacg
caacgctcgggaaaatccatcgacaccatccgcctgctgccggcgcgcgaatatccgctg
accgaggaatccatccagcatttccggcaggccttccgcgcccgcttcgaaggcgatccg
cagaaggtgtcactgtaccgcgacgtcagccggggcatcacgccctcgggcgcggaatat
taccttccgctgttctttccggagatggcgaacatttttgattatctgccgaaatccacg
ctgtgcctactggaggccggcgtaacggaaatcgccgaaaacttctggcgcgaaaccggg
cagcgctacgatgaaatgcgccacgaccgggaacggcccctgctggaaccgcccgtgata
ttcattaccccggctgaattattcagcgggatggaggcatggccgcgcgtcgaaataatg
gacgctgatatcgcgcaaaccggcgccaccgcacaggacgatcgtgaggcggtcatctat
ggcatgcgcccgcccgccagtcttccggtggattacaaatccggcgccccctacgcgacc
ctgttcagctatctgcgcgatttcagcggacgcatcctgctggtcgcggaatccgccgga
cggcgcgaaacgctgaaaggcctgctccacgaaaacggcctgccgccgcaagacatttcc
ggctggcgcgccttcctcgacggcactgcgaagctcggactcaccgtggccgatctggaa
aagggcctgctgctgaaggagccggacatcgccgtcatcaccgaggcgcagctgtacggc
gaacgcgccgcgcagcgacgccgccgtggacgcgcggagcgtgagcccgaagccatcatc
cgcagcctggcggagctgaaacccggcgacccggtggtgcacgaggatcatggcgtgggc
cggtatctcggtttgcagacgctcgatatcggcgacgggccggcggaatttctgacgctc
gaatacgccgatggggacaaactttacatcccggttctggcgctgcacctgatcagccgt
tacaccgggaccgatccggagaacgcgccgctgcacaaactcggcggcgaggcctgggaa
aaggccaagcgccgcgccctcgaaaaggcgcatgacgccgccgcggaattgctggaaatc
tacgccctgcgcgcggcgcgtgaaggccactccttcccaccgccggacgagcattaccag
tcattcgccggcgcttttccattcgaggagactccggatcaggagcgcgccatccaggaa
gtgctgcaggacatgcagaccgccaaacccatggaccggctggtctgcggcgacgtcggt
ttcggcaagaccgaagtcgccatgcgcgccgccttcctcgccgtgatgggcaaggcgcag
gtggcagtgctggtgccgaccaccctgctggcacaacagcattaccagaatttccaggac
cggttcgcgggactggcgtttcgcatcgagctgctgtcgcgggtccgcagccagggcgag
cagcgcgcgatcctcgccgcgctggcggacgggaccgtggacatcgtcatcggcactcat
cgcctgctgcaggacgacgtgcgtttccagcgcctgggactggtcattctcgatgaagag
caccgtttcggcgtgcgccagaaggagcgcctgaaaaaactgcgcagcgaggccgatatc
ctggccatgacggccacgcccatcccgcgcaccctgaacctgtcgctctcgggcctgcgc
gatatctcactgatcaccaccgccccggagggccgcctgtcggtcaagaccttcatcagc
gagaagaaccgctcggtcatccgcgaggcctgtttgcgcgaaatccggcgcggcggccag
gtgtattacctgtacaacgaggtccggaccatcgacaaggcggcgcgcgagctgcaggaa
ctgatgcccgaggcggacatccgcatcgcccacgggcagatgccggaacacgatctcgaa
cgcatcatgctcgacttctaccaccagcgcttcaacgtgctggtgtgctcgaccatcatt
gaatccggcatcgacgtaccgagtgccaacaccatcatcattgaacgggccgacaagttc
ggcttggcgcagctgcaccagctgcgcggacgtgtcgggcgctcgcaccatcgcgcctat
gcgtatctgctggtgccagaccggcgcgcgctgtccgaggacgcgcgcaagcgcctcgag
gccatcgagtcgctggaagaactgggagcgggattcacgctggcctcgcacgacctggag
atacgcggcgcgggcgagctgctgggggaaacccagagcgggatgatcgacgaggtggga
tttgcgctctactcggagctgctgaaccgcgcggtgaaatccctgcaggccgggaggctg
ccggccacggacgcgtcactgcacagcggggccgaaatcaacctgcacgcaccggcgctg
ttccccgaaaactacctgccggacgtgcacctgcggctggtgctctacaagcgcctgtcc
gccgcgcgcagcctgagcgcactgcaggaactgaaggaggagatcatcgaccgtttcggc
gtgctgccggagcccggccagctgctgtttcgcgccaccgagatcaagatacgggccacg
cccctgggcatccgcaagatcgatgccggcccacgcggcgcgcgcatcgagttcatcgaa
aaaccggacatcgaccccggcgctgttctgcgcctgctccagtccgcgccgcgccgctac
aagctcgatggaccgaaccggttgcgtattctgggggatttgccggaggtggaggaccgc
atcaaggcggtcatggcattgctggacaagctgtcgctgcgcgcggagatggcgatcagc
aagtaa
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