Sulfuricaulis limicola: SCL_1357
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Entry
SCL_1357 CDS
T05241
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCL_1357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slim03019
]
SCL_1357
03009 Ribosome biogenesis [BR:
slim03009
]
SCL_1357
Enzymes [BR:
slim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SCL_1357
Messenger RNA biogenesis [BR:
slim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCL_1357
Ribosome biogenesis [BR:
slim03009
]
Prokaryotic type
rRNA processing factors
SCL_1357
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
BAV33668
UniProt:
A0A1B4XFS9
LinkDB
All DBs
Position
complement(1361209..1363581)
Genome browser
AA seq
790 aa
AA seq
DB search
MKRILFNATHPEELRLAVVDGQKLLDLDIESSTYQQKKGNIYKGKVTRVEPSLEAAFVDY
GSERQGFLPLKEISRIYFQGFNERTPMSQVRIKDVIREGQELLVQVDKEERGTKGAALTT
FVSLAGRYLVLMPNNPKGGGISRRIEGEERAELREAMSQLKLPDDYSVIARTAGIGRSAE
ELQWDLDYLINLWDAIYKASQERAAAFLIYQESNLVVRATRDYLKTDIGEVLVDNPEIHE
RMIKFMQQVAPQFIDKLKLYKDETPMFSRYQIEHQIESAFSREVRLESGGAIVFDKTEAL
VTIDVNSARATKGADIEETAFNTNLEAAEEIARQLRLRDLGGLIVIDFIDMTPERNRREV
ENRMFESLKVDRARTQVGRISRFGLLEMSRQRLRPSLGESSSLICPRCRGTGHIRSVQSS
ALSILRMIQEEAMKENTAAVHVHLPIDTATFLLNEKRMEMSAIESRIGTPIMIIPMSDME
TPHYHIRRLRIDEYEAEADVPSYEIDLVEDEEDEDRRPTQPTPVSAEAEKPVIGPLTHSA
APPERPKPAAANGGGLIKKIITGLFGKKAEEEKKPVAAESRPMRQHQPGRGHGGGRPPHR
PPHGQRHERHAHGDRRPGGQGQGQDQNRQRPPQPPQAAGAPGGDANQAQRERPEGGSGRR
RRRGRRRGGRGQEGRAPQERQDFNARNGAPEANGSPDRPAPAPRPPREETSYVPPAAATG
GVTETFTETPPVASSWDKPSEQNNDGWHTPSSPTSGHDETHHAPDSSESAPKPELVQVET
RFDDDNKGNK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatcctgtttaacgcaactcaccccgaggagttgcggttggccgttgtcgac
ggccagaaactgctcgacctcgacatcgaatcctcgacctaccagcagaaaaagggaaac
atctacaagggcaaggtcacccgcgtggaaccgagtctggaagccgccttcgtggactac
ggttccgagcgccagggcttcctgccgctcaaggaaatctcccgcatttacttccagggt
ttcaacgaacgcaccccgatgagccaggtgcgcatcaaggacgtcatccgcgaaggccag
gaactgctggtgcaggtggacaaggaagagcgcggcaccaagggtgcggcgctcaccacc
ttcgtcagcctcgccggccgctacctggtgctcatgcccaacaaccccaagggcggcggc
atctcgcgccgcattgagggcgaggaacgcgccgagctgcgcgaggccatgtcccagctc
aagctgccggacgactactccgtcatcgcccgtaccgccggcatcggccgttcggccgag
gaactgcagtgggacctcgactacctgatcaacctgtgggacgccatctacaaggcttcg
caagagcgcgccgcggctttcctgatctaccaggaaagcaacctggtggtgcgcgccacg
cgtgattacctcaagaccgatatcggcgaggtgctggtggacaacccggagatccacgag
cgcatgatcaaattcatgcaacaggtggcgccgcaattcatcgacaagctcaagctgtac
aaggacgagacgccgatgttctcgcgctaccagatcgagcatcagatcgagtcggcgttc
tcgcgcgaggtgcgcctggaatcgggtggcgcgatcgtgttcgacaagaccgaagccttg
gtgacgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggagaccgcg
ttcaacaccaacctggaagcggcggaagaaatcgcccgtcagctgcgcctgcgcgacctg
ggcggcctgatcgtcatcgacttcatcgacatgacgcccgagcgcaaccgccgcgaagtg
gaaaaccgcatgttcgaatcgctcaaggtggaccgcgcccgcacccaggtcggccgcatc
tcgcgtttcggactgctcgagatgtcgcgccagcgcctgcgtccgtcgctcggcgagtcc
tccagcctgatctgcccgcgctgccgcggcaccggccatatccgcagcgtgcagtcctcc
gcgctctcgatcctgcgcatgatccaggaagaggccatgaaggaaaacaccgccgcggtg
catgtgcacctgccgatcgacaccgcgaccttcctgctgaacgagaaacgcatggaaatg
agcgccatcgaatcgcgcatcggcaccccgatcatgatcatcccgatgtcggacatggaa
actccccactaccatatccgccgcctgcgcatcgacgaatacgaggccgaggccgacgta
ccgagctacgagatcgatctggtcgaggacgaggaagacgaagaccgccggcccacccaa
cccacgccggtgtcggcggaagcggaaaagccggtcatcggtccgctcacgcacagcgcc
gcaccgccggaacgtccgaagccggctgccgccaacggcggcggcctcatcaaaaagatc
atcaccggcctgttcggcaagaaagccgaggaagaaaagaaaccggtggcggcggaaagc
cgtccgatgcgccaacaccagccgggccgcggccatggcggcgggcgcccgccccatcgc
ccgcctcacggccagcggcatgaacgtcatgcgcatggcgatcgccgtcccggcgggcag
ggtcagggtcaggaccaaaaccgtcagcgcccgccacagccgccgcaggccgccggcgct
cccggcggtgatgccaaccaggctcaacgtgagcgtcccgagggcggaagcggacggcgc
cgtcgtcgcggccgtcgtcgcggcggccggggccaggaaggcagagcaccgcaggagcgg
caggatttcaatgcgcgcaatggtgcgccggaagcaaacgggtcgccggaccgtccggca
ccggccccgcgtcctccccgcgaggaaacttcctacgtgccgccggccgccgcaaccggc
ggcgtgacggaaaccttcacggaaaccccacccgtcgcttcgtcctgggacaaaccgtcg
gagcagaacaacgacggctggcacacgccctcgtcgcccacgtccgggcatgacgaaacg
catcatgcgcccgacagcagtgaatccgctcccaaaccggagctggttcaggtcgagacc
cggtttgacgacgacaacaaaggcaacaagtaa
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