Sulfuricaulis limicola: SCL_2658
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Entry
SCL_2658 CDS
T05241
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCL_2658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slim03019
]
SCL_2658
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_2658
Enzymes [BR:
slim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCL_2658
Messenger RNA biogenesis [BR:
slim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCL_2658
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCL_2658
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAV34935
UniProt:
A0A1B4XJF1
LinkDB
All DBs
Position
complement(2701282..2703168)
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AA seq
628 aa
AA seq
DB search
MTRNNTSSGTHDKPLHILRSVFGYEHFRAPQAEVIDTLMRGGDALVLMPTGGGKSLCFQI
PSIARAGTGIVVSPLIALMQDQVAALRQAGVRAAFLNSTLTPEAARRIEQQLLDGALDLL
YVAPERLLLERTLDLLARARIALFAIDEAHCVSQWGHDFRPEYMQLSVLHQRFPDIPRIA
LTATADEPTRREISARLALEDARAFISSFDRPNIRYRITQGGGSAREQLLRFIRTEHAGD
AGIVYCLSRKRVEEVAEWLKAQGLDALPYHAGLAAEVRLHNQSRFINEEGVIIVATIAFG
MGIDKPNVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMIYGLQDVILLRQMLETSES
DAARKRVERHKLDAMLGLCELITCRRQALLGYFGETLAQPCGNCDTCLNAPETWDASLPA
QKALSCVHRTGQRFGVNYLMDVLMGKADERMQRFGHDKSSTFGIGKDLAANEWRSIYRQL
IARGLLAVDIEGHGSLKLTDACRPVLRGEERLMLRREIKAEKTKKAATRARTAFANTTDS
ALWEALRARRRQLALDQGVPPYVVFHDATLTQMIERRPRTLGEFGEISGVGERKLAAYGQ
EFLEIILAHTGQDKVPTLPTPAREAQPG
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
gtgacaagaaacaatacttcgtccgggacgcacgacaaacctctgcatatcctgcgcagc
gttttcggctacgagcatttccgcgcgccgcaggcggaagtgatcgacaccctcatgcgc
ggcggcgatgcgctggtgctcatgcccaccggcggcggcaagtccctgtgcttccagatt
ccttccatcgcgcgcgccggaacgggcatcgtggtctcgccgctgattgcgctcatgcaa
gaccaggtggcggcgttgcgccaggccggcgtgcgcgcggctttcctcaattccacgctc
acgccggaggcggcgcgccgcatcgagcagcaattactggatggcgcactcgatttgctt
tacgtcgcgcccgaacgcctgctgctcgagcgcacgctcgatctgctggcgcgtgcccgg
atcgccttgttcgccatcgacgaggcccattgcgtctcgcaatggggccacgattttcgc
ccggaatacatgcagctctcggtgctgcaccagcgcttcccggacatcccgcgcatcgcg
ctcacggccaccgccgacgagcccacgcgccgcgagatcagcgcgcgcctcgcgctggaa
gatgcgcgtgcgttcatcagcagtttcgaccgccccaatatccgttaccgcatcacccag
ggcggcggcagcgcgcgcgaacagttgctgcggttcattcgcacggaacatgccggcgac
gccggcatcgtttattgcctgtcgcgcaagcgcgtggaggaagtcgccgaatggctcaag
gcccagggcctggacgcgctgccgtatcacgccggccttgccgccgaggtgcgtttgcat
aaccagtcgcgcttcatcaacgaagaaggcgtcatcatcgtcgccaccatcgccttcggc
atgggcatcgacaagcccaacgtgcgttttgtcgcgcacctgaatctgccgaagagcatc
gaggcgtattatcaggaaaccggacgcgccgggcgagacggtttgccggccgatgcctgg
atgatttacggcctgcaggacgtgatcctgctgcgccagatgctggaaacctccgagtcc
gacgccgcgcgcaagcgcgtcgagcgccacaagctcgacgccatgctcggtctgtgcgag
ctcatcacttgccgccgtcaggcattgctcggctatttcggcgagacgctggcgcagcct
tgcggcaactgcgacacctgcctcaatgcgcccgaaacctgggacgccagcctgcccgcg
caaaaggccttgtcctgcgtgcatcgcaccggccagcgcttcggcgtgaactatctgatg
gatgtgctgatgggcaaggccgatgaacgcatgcaacgctttggccacgataaatccagc
actttcggcatcggcaaggacctggcggcgaacgaatggcgcagcatctatcgccagctg
atcgcgcgcggcctgctggcggtggatatcgaaggccacggttcattgaagctcaccgac
gcctgccgtccggtgctgcgcggggaagagcgcctcatgctgcggcgcgaaatcaaagcc
gaaaaaaccaaaaaggccgcgacgcgcgcacgcacggcgttcgccaacacgaccgactcg
gcgttgtgggaagcgctgcgcgcccgccggcgccagctggcgctcgatcagggtgtcccg
ccgtacgtcgtgtttcacgacgccacgctcacgcaaatgatcgagcgccgcccgcgcacg
ctgggcgaattcggcgagatctccggtgtcggtgaacgcaaactcgcggcttacggccag
gagtttttggaaattattctggcgcacacgggccaggataaagtacccacactgccaacc
ccggcgcgagaagcgcaacccggataa
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