Sulfuricaulis limicola: SCL_2771
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Entry
SCL_2771 CDS
T05241
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03030
DNA replication
slim03410
Base excision repair
slim03420
Nucleotide excision repair
slim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCL_2771
03410 Base excision repair
SCL_2771
03420 Nucleotide excision repair
SCL_2771
03440 Homologous recombination
SCL_2771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slim03032
]
SCL_2771
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_2771
Enzymes [BR:
slim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCL_2771
DNA replication proteins [BR:
slim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCL_2771
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SCL_2771
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCL_2771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
DNA_pol_lambd_f
HHH_5
IMS_HHH
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BAV35048
UniProt:
A0A1B4XJS1
LinkDB
All DBs
Position
complement(2822827..2825538)
Genome browser
AA seq
903 aa
AA seq
DB search
MSADGKKGGPLVLVDGSSYLYRAFHAMPALANSRGEPTGAVYGVTNMLRRLLADYDTEYM
AVVFDARGKTFRDDIYPEYKAHRPPMPDDLSIQIEPIHAIVRALGLPLIQVEGVEADDVI
GTLARAAAAEGREAVISTGDKDMAQLVDRHVQLVDTMKDAVSDRDAVIEKFGVPPERIID
YLALVGDTSDNIPGVPGVGPKTAAKWLQEYGSLDAVMAHANDVPGKAGESLRASLGHLPM
ARQLATIKCDVDLKLAPGDLRRAAPDAARLRELFSRLEFKSWLAELGGANAPAAAATPAT
TNAKYQMITDMPALDAWLARLAQSKLFAFDTETTSLDAMQAEIVGVSFTDRAGEGAYVPL
AHEYPGAPEQLGRDAVLEKLKPLLEDESRPKIGQNFKYDMSVLANYDIRLAGMRYDTMLE
SYVLDSTASRHDMDSLALKYLGYKTVKYEEVAGKGKHQINFREVPLDTATAYAAEDADIT
FRLHQHLWPRLKETPTLVKLFDEIEMPLVPVLARMERHGVLIDVAMLRAQSHELGKRLLE
LETEAYKLAGQPFNMGSPKQIQEVLYDKHKLPVLKKTPTGQPSTAEEVLQELALDYPLPQ
LILDYRSLAKLKSTYTDKLPEMIDPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRTAE
GRRIRQAFIAAPGYRIMSADYSQIELRIMAHLSGDKGLIHAFANNMDVHRATAAEVFGVA
PDLVSDDMRRAAKAINFGLIYGMSAFGLAKQLRIERVAAQEYVERYFARYPGVREFMERT
RETARRQGYVETLFGRRLHTAEINAANMNRRQAAERAAINAPMQGTAADLIKRAMIVVDA
WIPRSGLDIRMIMQVHDELVFEVAETAVDTARKHVRAAMSGVATLSVPLVVDIGVGGNWD
EAH
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggcggacgggaagaaaggcgggccactggtcctggtggacggctcatcctatctc
taccgcgccttccacgccatgcccgcgctcgccaactcgcgcggcgagcctaccggcgcg
gtctacggcgtgaccaacatgctgcgccgcctgctcgcggactacgacaccgaatacatg
gcggtggtgttcgacgccaggggcaagaccttccgcgacgacatctaccccgagtacaag
gcgcaccgcccgccgatgccggacgatctttcaatccagatcgagccgatccacgccatc
gtgcgcgccctcggcctgccgctgatccaggtcgaaggcgtggaggccgatgacgtgatc
ggtacgctggcgcgcgccgccgccgccgagggacgcgaggccgtgatctccaccggcgac
aaggacatggcgcagctggtggaccggcatgtgcaactggtggacaccatgaaggacgcc
gtgagcgaccgcgatgccgtgattgaaaaattcggcgtgccgccggaacgcatcatcgat
tatctcgcactcgtgggtgatacctccgacaacatccccggcgtgcccggcgtcggcccc
aagaccgcggccaaatggttgcaggaatacggctcgctcgacgcggtcatggcgcatgcg
aatgacgtgcccggcaaggccggcgagagcctgcgcgcctcgttgggccacctgccgatg
gcgcgccagctggccaccatcaaatgcgacgtggacctcaagctcgcgcccggcgacctc
aggcgcgcggcgccggacgcggcgcgcctgcgcgaattgttttcgcgtctggaattcaag
tcgtggctggcggagctgggcggcgccaacgcccccgcggcggcagccacgccggccacg
acgaatgcgaaataccagatgatcaccgacatgccggcgctcgatgcctggctggcgcgg
ctggcgcaatcgaaactgttcgccttcgataccgagaccaccagcctcgacgcgatgcag
gccgagatcgtcggcgtgtcgttcaccgatcgggcgggcgagggcgcctacgtgccgctg
gcgcatgaatatcccggcgcgccggagcagctcggccgcgacgccgtgctggaaaaactg
aaaccgctgctggaagacgaaagccgtcccaaaatcggacagaacttcaaatacgacatg
agcgtgctggccaattacgacatccggctggcgggcatgcgctacgacaccatgctcgaa
tcctacgtgctggattcgaccgcctcgcgccacgacatggattcgctggcgctcaagtac
ctcggctacaagacggtcaaatacgaagaggtcgccggcaagggcaagcaccagatcaat
ttccgcgaggtgccgctggatacggccacggcctacgccgccgaggatgccgatattact
ttccgcctgcaccagcacctgtggccgcggctgaaggaaacgccgacgctggtgaagctg
ttcgacgagatcgaaatgccgctggtgccggtgctggcgcgcatggaacgccacggcgtg
ctcatcgacgtcgccatgttgcgcgcgcaaagccacgagctgggcaagcgtctgctcgag
ctcgagaccgaggcctacaaacttgccggtcagccgttcaacatgggctcgcccaagcag
atccaggaagtgctgtacgacaagcacaagctgccggtgctcaagaaaacccccaccggc
cagccgtccacggcggaagaggtgttgcaggaactggcgctggactatccgctgccgcag
ctgattctcgactaccgcagcctggccaagctcaagtctacctacaccgacaagctgccg
gagatgatcgatccgaaaaccgggcgcgtgcacacctcgtatcaccaggcggtggcagcg
accgggcggctgtcctcgaccgatccgaatctgcaaaacatcccggtgcgcaccgccgag
gggcggcgcatccgccaggccttcatcgccgcgcccgggtaccggatcatgtcggccgac
tactcgcagatcgagctgcgcatcatggcgcatctctcgggcgacaaggggctgattcat
gcctttgccaacaacatggacgtgcatcgcgccaccgccgccgaggtattcggcgtggcg
ccggatctcgtgagcgatgacatgcgccgcgccgccaaggccatcaatttcggattgatc
tacggcatgtcggccttcggtctggcgaagcaactgcgcatcgaacgcgtggcggcgcag
gaatatgtcgagcgctatttcgcgcgctaccccggcgtgcgcgagttcatggagcgcacg
cgcgagaccgcgcgccgccagggctacgtcgagacgctgttcgggcggcgcctgcacacc
gccgagatcaatgccgccaacatgaaccgccgccaggccgccgagcgcgctgcgatcaac
gcgccgatgcagggcacggcggcggacctcatcaagcgcgccatgatcgtggtggacgca
tggattccgcgatccggcctcgacatccgcatgatcatgcaggttcacgatgagctggtg
ttcgaggtggcggaaacggccgtcgacaccgcgcgcaaacatgtgcgcgccgccatgagc
ggcgtggcgacgttgtccgtaccattggtggtggatatcggcgtgggcggcaattgggac
gaggcgcactga
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