Streptococcus lingualis: SM123_07365
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Entry
SM123_07365 CDS
T10630
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slin Streptococcus lingualis
Pathway
slin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM123_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slin03019
]
SM123_07365
03009 Ribosome biogenesis [BR:
slin03009
]
SM123_07365
Enzymes [BR:
slin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SM123_07365
Messenger RNA biogenesis [BR:
slin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SM123_07365
Ribosome biogenesis [BR:
slin03009
]
Prokaryotic type
rRNA helicases
SM123_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPS46403
UniProt:
A0ABZ0SUZ7
LinkDB
All DBs
Position
complement(1540569..1542140)
Genome browser
AA seq
523 aa
AA seq
DB search
MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLF
SATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQIIENLTKK
RMKGMKPATAEEAFQAKKQVALKKIERDFEDEKIRTNFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGGGFGGKGKGGRGNGRRGDQRRDRNRRDDREG
GRRDFKRKSNKNSRDFEGKGNKRPHRTSNEKKNGFVIRNKGDK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattcaatgaatttaacttatctgctgaattattagcagaaatcgaaaaagctggc
tttgtagaagcaagcccgatccaagaacaaaccattcctttggctcttgaaggaaaagat
gtcatcggtcaagcgcaaacagggactggtaaaacagctgctttcggtcttccaacgttg
gagaagattgatgtcgataacacagtgatccaagcccttgtcattgcaccaacgcgtgaa
ttggccgttcaaagtcaggaagaactcttccgctttggacgcagtaagggtgttaaagtt
cgctctgtctatggtggatcaagcattgaaaagcaaattaaagctttgaagtcaggtgct
cacatcgttgtgggaacacctggacgcttgctagatttgatcaagcgcaaggccttgaaa
ctcgatcatattgaaaccttgatcttggatgaagcagatgaaatgctcaacatgggcttc
ttggaagatatcgaagccatcattagccgtgttccagaaacacgccaaaccttgctcttt
tcagcaacgatgccagaagcgatcaagcgtatcggtgttcagtttatgaaagagccagaa
cacgttaagattgcggccaaagaattgaccaccgatttggtcgatcaatactatattcgt
gtcaaagaaggcgaaaagtttgataccatgactcgattgatggatgtcgagcagcctgaa
cttgccatcgtctttggtcggacaaaacgtcgggtcgatgaattgacgcgtggcttgaaa
atccgtggtttccgagcagaagggattcacggagatttggatcaaaacaaacgtcttcgt
gtccttcgtgatttcaaaaatgggaacttggacgtcttggtggcaacggacgttgcggca
cgtgggttggacatttcaggtgtgacccatgtctacaactacgatattccacaagatcca
gaaagctatgttcaccggatcggacggacaggtcgtgctgggaaaacagggcaatccatt
acctttgtttcgccaaatgaaatgggctatttgcaaatcattgagaacttgaccaaaaag
cggatgaagggaatgaaacctgcaacagcagaagaagccttccaagcgaaaaaacaagta
gcgctgaagaaaattgagcgagactttgaggatgaaaaaatccggactaactttgagaag
tttggtaaagatgctcgcaaattggctgcagaattcactcctgaagaattggctatgtat
atcttgagcttgacagttcaagatccagatagtcttccagaagttgaaattgcgcgtgaa
aaaccattgccatttaaaccatccggtggtggctttggtgggaaaggcaaagggggccgt
ggaaatggccgtcgtggagaccaacgccgtgaccgaaatcgcagagatgaccgtgaaggt
ggacgccgtgatttcaaacgcaagtccaataaaaatagccgagactttgaaggcaaaggc
aacaaacgtcctcatcgtacttccaatgaaaagaaaaatggatttgttatccgcaacaaa
ggggataaataa
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