Streptococcus lingualis: SM123_10015
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Entry
SM123_10015 CDS
T10630
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slin Streptococcus lingualis
Pathway
slin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SM123_10015 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slin03021
]
SM123_10015 (rpoC)
03400 DNA repair and recombination proteins [BR:
slin03400
]
SM123_10015 (rpoC)
Enzymes [BR:
slin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SM123_10015 (rpoC)
Transcription machinery [BR:
slin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SM123_10015 (rpoC)
DNA repair and recombination proteins [BR:
slin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SM123_10015 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WPS46883
UniProt:
A0ABZ0SWC9
LinkDB
All DBs
Position
complement(2066850..2070503)
Genome browser
AA seq
1217 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGPGSFVAKMGAEAIQDLL
KQVDLEAEIALLKEELKTATGQKRVKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMALRNGYVHLHTRVGI
ATDSLNKPWTEAQQHKILLTTVGKILFNDIMPAELPYLQEPNNANLTEGVPAKYFLEPGQ
DVKAAIEKLELNVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRRGLITDDERYNAVTAEWRAAREKLEKRLVDNQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVIRAITDGKEMIEPLE
ERLTGRYTKKSVKHPETGEVIVGPDTLISEDLAREIVKAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDASTRTKKVFVSGATGEGEYVVPYTARMKVEVGDQV
SRGDALTEGSIQPKRLLAVRDVLSVETYLLAEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDITDFTDANKDVLISGGVPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEEVP
LTDGTVDEVQTAEVIEE
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagcaaggtc
cgttcatggtcttatggagaggtcaagaaacctgaaacaatcaactaccgtacattgaag
ccagaacgtgaaggtctctttgatgaagtcatctttggacctacaaaagactgggaatgt
gcgtgtgggaaatacaaacgaatccgttacaaagggattgtttgtgaccgctgtggggtt
gaagtaacacgtgcgaaagttcgtcgtgaacgcatggggcacatcgagttgaaagcacct
gtatcacacatctggtacttcaaaggaatcccttctcgtatgggattgaccttggatatg
agccctcgtgcccttgaagaagtcatctacttcgcagcttatgtggtgatcgatccaaaa
gatactccacttgagcacaaatccatcatgacagaacgtgaataccgtgaacgcttgcgt
gaatacggaccaggttcctttgtagctaagatgggtgcagaagccatccaagacctcttg
aaacaagtggatctggaagctgaaattgctctcttgaaagaagaattgaagactgcaact
ggtcaaaaacgtgtgaaggctgtgcgtcgtttggatgtcttggacgccttctacaaatct
ggcaacaagccagaatggatggttctcaacatccttccggttattccaccagatcttcgt
ccgatggtccaattggatggtggccgttttgctgcctctgacttgaacgacctttaccgc
cgtgtgattaaccggaacaaccgtttggcacgtttgcttgagttgaatgcccctggtatc
atcgtgcaaaacgaaaaacggatgctccaagaagccgttgatgctttgatcgataacggt
cgtcgtggtcgtccaatcacaggaccaggtagccgtccattaaaatcattgagtcacatg
ctcaaagggaaacaaggacgcttccgtcaaaacttgctcggtaaacgggttgacttctca
ggacgttctgttatcgccgttggtccaactcttaagatgtaccaatgtggtgtgccacgt
gaaatggcgatcgagctcttcaaaccattcgtgatgcgtgaaatcgttgcgcgtgatatc
gtgcaaaacgttaaagctgcaaaacgcttggtcgaacgtggagatgaacgcatctgggat
atcctagaagaagtgatcaaagaacacccagttctcttgaaccgcgcaccgacccttcac
cgtttggggatccaagcttttgaacctgtcttgattgacgggaaagctcttcgcttgcac
ccacttgtctgtgaagcctataatgccgactttgacggggaccaaatggccatccacgta
ccgctttcagaagaagctcaagcagaagctcgtatcttgatgttggctgctgagcacatc
ttgaatccaaaagacggtaaaccagttgttaccccatctcaggatatggtattggggaac
tattacctcactatggaagaagctggtcgtgaaggcgaaggcatggtcttcaaagaccgt
gatgaagcggtcatggcccttcgcaatggctatgttcacttgcatacacgtgtcggaatt
gcgacagatagcttgaacaaaccatggacagaagcgcaacaacacaagattctcttgaca
actgttggtaagatcctctttaacgatatcatgcctgcagagcttccataccttcaagag
ccaaataatgccaacttgacagaaggcgttccagctaagtacttcttggagcctggtcaa
gatgtcaaagcagcgattgagaaattggaattaaacgttccattcaagaagaaaaatctt
ggaaatatcatcgcagaaatcttcaaacgcttccgtacaactgaaacgtctgctttcttg
gaccgcttgaaagacttgggttaccatcactcaacccttgctggtttgacagtggggatt
gccgatattccggtcgttgaagataaggcagaaatcattgaagaatctcacaaacgtgtg
gaacaaatcactaaacaattccgtcgtggtttgatcacagatgacgaacgctacaatgcc
gttacagctgaatggcgtgcagcccgtgaaaaattggaaaaacgcttggtggataaccaa
gatccgaagaacccaatcgttatgatgatggactctggagcccgtggtaacatttcaaac
ttctcgcaacttgccggtatgcgtggtttgatggccgctccaaacggacggatcatggaa
ttgccaatcctgtcaaacttccgcgaaggtttgtcagtactcgaaatgttcttctcaact
cacggtgcccgtaaagggatgaccgatacggccttgaagacagccgactcaggttacttg
actcgtcgtttggttgacgtggcccaagacgtcattatccgtgaagatgactgtggaaca
gaccgtggacttgtgatccgtgccattactgatggtaaggaaatgatcgagccactcgaa
gaacgcttgactggtcgttataccaagaaatctgttaaacatcctgaaacaggtgaagtc
atcgttggtccagataccttgatttcagaagacctagcacgtgaaattgtcaaagctggt
gttgaagaagtcactatccgctctgtctttacatgtaacacccgccatggtgtctgccgt
cactgttatggtatcaacttggcgactggtgatgcggttgaagtgggtgaagcagtcgga
actatcgctgcccaatctatcggggaacctggtacacagttgaccatgcgtaccttccac
acgggtggggttgcctcaaataccgatatcactcagggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatccaaaaggggaagcggtcatcactgaggtcaaaggggaagtcaca
gcgatcgaagaagatgcttctacacgcaccaagaaagtctttgttagcggagcaactggt
gagggcgaatacgttgtcccttacactgcccgcatgaaagtcgaagtgggagatcaagtc
tctcgtggtgatgctctgacagaagggtctatccaaccaaaacgtctccttgccgttcgt
gatgtcttgtctgttgaaacttaccttcttgcggaagtacaaaaagtataccgtagccaa
ggggtagaaatcggcgacaaacacatcgaggtaatggtgcgtcaaatgatccgtaaagta
cgtgtcatggatccaggagatacagaccttctcatgggtactctgatggacattacagac
tttacagatgctaataaggatgtccttatttctggtggagttcctgcgactgctcgtcca
gtccttatgggaattaccaaagcctcacttgaaaccaacagtttcttgtctgcggcttcc
ttccaggaaacaactcgtgttcttacagacgcagcgatccgtggtaagaaagaccatctc
cttggacttaaggaaaatgttatcattggtaagattattcctgcaggtacaggtatggct
cgttaccgcaacttggaaccacaagcgattaatgaagttgaaattatcgaagaagtgcca
ttaacagatggaacagtcgatgaagttcaaacagctgaagtcatagaagaataa
DBGET
integrated database retrieval system
