Simiduia litorea: R50072_04720
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Entry
R50072_04720 CDS
T10759
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slio Simiduia litorea
Pathway
slio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R50072_04720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slio03021
]
R50072_04720 (rpoC)
03400 DNA repair and recombination proteins [BR:
slio03400
]
R50072_04720 (rpoC)
Enzymes [BR:
slio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R50072_04720 (rpoC)
Transcription machinery [BR:
slio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R50072_04720 (rpoC)
DNA repair and recombination proteins [BR:
slio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R50072_04720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6383
Motif
Other DBs
NCBI-ProteinID:
BFM10319
LinkDB
All DBs
Position
552469..556689
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLNLLKSQGQVEEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTTLELGQLLNDEQYFEAMEEFGDEFEASM
GAEAIQKLMADIHLEQEIQFLREEIPNTNSETKIKKYSKRLKLLEAFFGSGNKPEWMVLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLELKGLATTIKAAKKMVEREEPVVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERINAKGEGMAFADVKEVNRAYHGK
VAELQAKIKVRVNQVTFGEQGERIEVSKVVDTTVGRVLLWEIAPEGIPFDMVNKNMVKKA
ISALINYCYRQVGLKSTVIFADQLMYMGYEYSTKSGSSIGVNDFAIPDAKAKIVERAEND
VKEIESQFAAGLVTQGEKYNKVIDIWSRANDLVAKSMMEGISKEAVTNRDGKEEMQDSFN
SVYMYADSGARGSPAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEVDCGTDEGLTMSPVIEGGDIIDSLGDRIL
GRVIARDVVRSDSDEILIPAGTIIDEEWVKRVEKMGIDEVCVRSPITCETRQGICAQCYG
RDLARGHRANMGESIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSVSVKQEGTIRL
HNIKVVSRPDGHLVAVSRSGELAVADGNGRERERYKIPYGALITVKEGETVDGGQIVAKW
DPHVHPIVTEVAGQVAFSGMEEGLSVRRQTDELTGLSSIEIIDPAERPAAGKDLKPAITL
IDEKGDELYLPNTNVPAHYALPPKSILSISNGDKIVVGDILARIPQEGSKTRDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKRRLVITPSDGQPLPDGSTHYEVLIPKHR
QLTVFEGEQVARGEVVSDGPSNPHDILRLKGVEALARYITNEIQDVYRLQGVKINDKHIE
TICRQMLRKVEITTMGDSSFVKGEQAEFHKVLEENERLRAEGKQPATYERQLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKRDDLRGLKENVVVGRLIPAGTGLAYHNERRRVRD
KAPNEGGVSAAEVEAALTEALKSSAS
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttacttaatctgctgaagtcccagggacaggttgaagaatttgacgcgatt
cgtattggtttggcatcgccagacatgattcgctcttggtcatttggcgaagttaaaaag
ccagagacaatcaactaccgcacgttcaaacctgagcgtgaaggtttattctgcgccaaa
atttttggcccagtaaaagactacgaatgtttgtgcggcaagtacaagcgcatgaaacat
cgcggcatcatttgcgaaaaatgtggcgtcgaagtgaccttggccaaagtgcgtcgcgag
cgcatgggccacattgagctagcgtcgcccgttgctcatatttggtttttgaaatccctg
ccaagccgtattggcttgttgctggatatgaccctgcgcgacatcgagcgggtgttgtat
tttgaatcttacgttgtaactgacccaggcatgaccacgctagagctgggtcaactgctg
aacgatgagcagtacttcgaagccatggaagaatttggcgacgaattcgaagccagcatg
ggtgcagaggctattcagaagctgatggcggatattcatctcgagcaagagattcaattc
ttgcgcgaagaaattccaaacaccaattctgaaaccaaaattaaaaagtactccaagcgc
ttgaagttgcttgaagctttcttcggctcgggcaacaagcctgagtggatggtgttggaa
gcgctgccagtgttgccgccggatttgcgtcctttggtaccgctagacggcggccgcttt
gcgacctctgatctaaacgatttgtatcgccgcgtgatcaaccgcaacaaccgcttgaag
cgtttgttggatttgtctgcgccagacatcatcgtgcgcaacgaaaagcgcatgttgcag
gaagctgtggatgcgttgctggataacggccgtcgcggtcgtgccatcaccggttcaaac
aagcgtcctttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcaa
aacttgctgggtaagcgggtagattactccggtcgttctgtgatcgtggtaggtccaacc
ctgcgcttacatcagtgtggtttgccgaagaaaatggcgttggaattatttaaaccgttt
attttcagcaagctggaattaaaaggcttggcgaccactatcaaagctgcaaagaagatg
gtcgagcgcgaagagccagtggtttgggacattctcgacgatgtcattcgcgaacatccg
gtgttgttaaaccgtgcgccaacgcttcaccgtctgggtattcaggcgttcgagcctgtg
ttgattgagggtaaggcgatccagttgcacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgacgattgaagctcagttggaagcg
cgtgccttgatgatgtcgaccaacaacatcctgtcaccagccaacggtgagccaatcatc
gtgccttcgcaggacgttgtattgggtctctattggatgacccgcgagcgtattaatgcc
aagggcgaaggcatggctttcgctgacgttaaagaagttaaccgcgcctaccacggtaaa
gttgccgagctgcaagcgaagattaaagttcgcgtcaatcaagtgactttcggcgagcag
ggcgagcgtatcgaagtatcaaaagttgttgatactacggttggtcgcgtgctgctgtgg
gaaattgcgccagagggtattccctttgacatggttaacaagaacatggtgaaaaaggca
atctctgccttgattaactactgctaccgtcaagttggcttgaaatcgaccgtcattttt
gccgatcagttgatgtacatgggttacgagtactcaactaaatctggttcgtctatcggt
gtgaatgactttgccattcccgatgcgaaggccaagattgttgagcgtgccgaaaacgac
gtgaaagaaattgaaagccagtttgctgccggtttggttacccagggcgagaagtacaac
aaggtgatcgatatctggtcgcgcgctaacgatctcgtggctaagtccatgatggaaggt
atcagtaaagaagctgtgaccaaccgcgatggcaaagaagaaatgcaagacagcttcaac
tccgtgtacatgtacgccgactcaggagcgcgtggttcgccagcgcagattcgtcagcta
gccggtatgcgtggtttgatggcgcgtccagatggctcgattatcgaaacgcctattacc
gcaaacttccgcgaaggtttgaacgtacttcagtacttcatctctacgcacggtgcgcgt
aaaggtttggctgataccgccttgaagacggcaaactctggttacttgacccgtcgtttg
gttgacgtggcgcaagacgttgttgtgaccgaagtagattgtggcactgacgaaggtttg
accatgtcgccagtgatcgaaggtggcgacatcatcgactccttgggtgatcgtattctt
ggtcgcgttattgcgcgcgatgtggtccgctctgattcagatgaaattctgattccggcc
ggcactatcatcgacgaagagtgggttaagcgcgttgagaaaatgggtattgacgaggtt
tgtgtgcgctcgccaattacctgtgaaacgcgccaaggcatttgcgctcagtgttatggt
cgcgatctggcccgtggccatcgcgccaacatgggcgaatctatcggtgttatcgctgct
cagtcaatcggtgagcccggtactcagttgaccatgcgtaccttccacatcggtggtgcg
gcatctcgagcgtctgctgcagacagcgttagcgtcaagcaggaaggtactattcgcctg
cacaacattaaagttgttagccgtccagatggccacttggttgcggtttcccgttccggt
gagctggcggttgccgacggcaatggtcgcgagcgcgagcgctacaagattccttacggc
gccttgattaccgttaaagagggcgagaccgtcgacggtggccaaatcgtagctaagtgg
gatccgcacgttcatcccatcgtgaccgaagtggccggtcaggtagccttctcaggtatg
gaagaaggtttatctgtgcgtcgtcaaacggacgagttgacgggtctgtcgtcgatcgaa
attatagatccggctgaacgtcccgctgctggtaaggatttgaagccagcgatcaccttg
atcgacgaaaaaggcgacgagctttacttgccgaataccaacgtgcctgcgcactatgcg
ttgccacctaagtcaattttgtcgatcagtaatggcgataagattgtggttggtgacatt
cttgcgcgtattccgcaggaaggttcgaagactcgcgatattaccggtggtttgccgcgc
gttgccgacttgttcgaagcgcgtaagccgaaagagccgtcaatcttggcggaaatctcc
ggtaccgttagcttcggtaaggaaaccaaaggtaagcgccgcttggtgattaccccgagc
gatggtcagccattgccagacggttcaacccattacgaggtgctgattcctaagcaccgt
caattgacggtgttcgaaggtgagcaggtagcgcgtggtgaagttgtgtcggacggtcca
agcaatccacacgatattttgcgcctcaaaggtgttgaagccttggctcgttacattact
aacgaaatccaagacgtttaccgcctacagggtgtaaagatcaacgataagcacatcgaa
accatttgccgtcaaatgctgcgcaaggttgagatcaccaccatgggtgactctagcttc
gtgaagggcgagcaggctgagttccataaagtgctggaagagaacgagcgtctgcgcgcc
gaaggtaagcagcctgctacctacgagcgtcagttgcttggtattaccaaggcgtccttg
gcgaccgaatctttcatctccgcggcttccttccaggaaaccacgcgcgtattgaccgag
gctgccgtaaccggcaagcgcgatgatctgcgcggcttgaaagagaacgtggttgtgggc
cgcttgattccagcgggtaccggtttggcctaccacaacgagcgtcgtcgcgtgcgtgac
aaggcgccaaatgagggtggtgtgagtgctgcggaagtagaagcagccttgaccgaagcg
ttgaaatccagcgcaagctga
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