Simiduia litorea: R50072_08260
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Entry
R50072_08260 CDS
T10759
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slio Simiduia litorea
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slio03016
]
R50072_08260
Enzymes [BR:
slio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
R50072_08260
Transfer RNA biogenesis [BR:
slio03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
R50072_08260
Prokaryotic type
tRNA splicing ligases
R50072_08260
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GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BFM10673
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Position
948360..949556
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AA seq
398 aa
AA seq
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MPIQQVLAAHKDQRLPVKIWTDDVDYKAQAQLSRVANLPFVHSHVAAMPDVHLGKGATVG
SVIATEKAIIPAAVGVDIGCGMNALRLSLRASDLPDNLKAIRNAIERSVPLGAGGKHKTA
QIRGGDAIAMGLSAIFEKHKTLAKMIKPDTYARQIGTLGSGNHFIELCLDEEDAVWVMLH
SGSRGIGNKIGMYFIQLAKRDMERWMINLPDKDLAYLTEGSDHYQDYIEAVTWGQEYARL
NRAAMMDAVLDVLRRQLPPFVVTQEAINCHHNYVEMEQHFGKNVWVTRKGAIRARATDLG
IIPGSMGDKSYIVRGKGNPDSFCSCSHGAGRRLSRTAAAKQFTVDDLALATQGIECRKDK
AVIDEIPMAYKPIDEVMANQTDLVEVVHTLRQVVNVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctattcaacaggtgttggcagcgcacaaagatcaacggctgccagtgaaaatttgg
accgacgatgtggattacaaagcgcaggcgcagttgagccgggtggcaaatttaccgttt
gtccattcgcatgtggcggctatgccagacgtgcacttaggtaaaggcgctacggttggc
tcggtgatagcaacagaaaaagcgattattcccgccgccgtgggtgtggatattggctgt
ggtatgaatgccctgcgtttgtcgctgcgcgcgtcagatttgccagataatttaaaggca
attcgaaacgctatcgagcgctcggtacccttaggcgcaggcggcaagcataagactgca
cagattcgcggcggcgatgccatcgccatgggcttaagtgcgatttttgaaaagcataaa
accttggccaaaatgattaagccagatacctatgcccgtcaaattggcacgctgggttcg
ggcaaccactttatcgaattgtgtttggatgaggaggacgcggtttgggtgatgttacat
tcaggcagccgtggtattggcaataaaatcggtatgtattttattcagttggccaaacga
gacatggagcgctggatgattaacttgccagataaagacttggcctatttgaccgagggt
tcggatcactatcaggactatattgaggctgttacttggggccaagagtatgcgcggtta
aatcgcgcggcgatgatggatgcggtattagatgtattgcgccggcagttaccgcccttt
gtggttacccaagaggctattaactgtcatcacaattatgtggaaatggaacagcacttt
ggcaagaacgtttgggtgactcgaaagggtgccattcgagcgcgcgcaactgacttgggt
attattcctggttctatgggcgacaaaagctacatagtgcgcggtaagggtaatcccgat
agtttttgttcttgctcccatggtgccgggcggcgcttgagtcgaaccgcagcggcgaag
cagtttaccgttgatgatttggcactcgcaactcagggcatcgagtgtcgaaaagataag
gcggtgattgatgagatccccatggcttataaaccgatcgatgaggttatggctaatcaa
acggatttggttgaggtcgtacatacactgaggcaagtggttaacgtcaaaggatga
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