Simiduia litorea: R50072_15570
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Entry
R50072_15570 CDS
T10759
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
slio Simiduia litorea
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slio03009
]
R50072_15570
Enzymes [BR:
slio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50072_15570
Ribosome biogenesis [BR:
slio03009
]
Prokaryotic type
rRNA helicases
R50072_15570
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
Flav_NS3-hel_C
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BFM11404
LinkDB
All DBs
Position
complement(1791227..1792606)
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AA seq
459 aa
AA seq
DB search
MFKTLGLDERLIKALDAQTITEPTDVQKAVYDTALSGKDLLVMSETGSGKTLAFLLPLVQ
RILTEPTSNAGTLALILAPTRELAKQLLAETKLILKFTKLRVGIISGGDDYKFQAAQLRK
DPEIIIATPGRLLEHFNRNLPAMDKLRVLILDEADRMLDMGFHDDMVAITNKLTKARNTW
LFSATLSHAGVGTLAGELTHKPEKISLSTGRQTQANIHQQVVLSDGQNHKQKTITQLLRT
VPYEQALVFTNTRVQVDHLCQFLRAQDIKTGAIHGDMAQEDRNKVMELMRKGHVKVLVAT
DVAARGLDIGGIELVINFDMARNGDDYTHRIGRTGRAGAEGHAISFITPQEWNLKAGVER
YLGTSFEIITIPGFESRYKGPEKVKSSGKAAGPKKADRKASQERAAKKKDKDNKVKVRDR
DQKNVGKRRTPAKGPDLGDGFAPPTLAKKRPPLKDAEDA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaaaacactgggtctggatgaacgcttaattaaggcattggatgcccagaccatt
accgagccgacggacgtgcaaaaggccgtctacgacaccgcccttagcggcaaagaccta
ctggttatgtctgaaaccggcagcggtaaaacgctggcttttttactgccgctggtgcag
cgaattttaaccgagccgaccagcaatgcaggcaccctagccttaatcctcgcgcctaca
cgcgaactggccaagcaactgttggccgaaaccaagttgattctcaagttcaccaaattg
cgcgtaggcattatcagcggtggcgacgactacaaattccaagcggcacagttgcgcaaa
gacccagaaattatcattgccacccccggccgcttactcgagcacttcaatcgcaacttg
cccgccatggataaactgcgcgtgcttattttggatgaagcagaccggatgctagacatg
ggctttcacgatgacatggtggccattaccaacaagctcaccaaagcgcgcaatacctgg
ttattctccgccaccctatcgcacgcaggcgtgggtacactggcgggcgagctcacccat
aaaccagaaaaaattagcctgtccacaggccggcaaacccaagccaacattcaccagcaa
gtggtgttaagcgacggtcaaaatcacaaacaaaaaaccattacccaattgttgcgcaca
gtgccctacgagcaggcgctggtattcaccaacacccgcgttcaagtagatcacctgtgt
caatttttgcgcgcccaagatattaaaaccggcgcaatacatggcgacatggcgcaggaa
gatcgcaacaaagtcatggagctcatgcgcaagggccacgttaaagtcttggtggccacc
gatgttgccgcgcgcggtttagatattggcggtattgagctggtaattaacttcgatatg
gcgcgcaatggcgacgactacacccaccgtatcggtcgcaccggccgcgccggcgccgaa
ggccatgccattagctttatcaccccgcaagaatggaacttaaaagctggggttgaacgc
tacttaggcacgagcttcgagatcatcaccattcccggtttcgagtcacgctataaaggt
ccagaaaaagtgaagtcctctggtaaagcggcaggtccgaaaaaagctgaccgcaaagct
tcacaagaacgggccgcgaagaaaaaggacaaagacaataaagtgaaagttcgcgaccgg
gatcagaaaaatgtcggcaagcgtcgcacacctgcgaaagggccagacctaggcgacggt
ttcgctccaccgactctcgcaaaaaaaagaccaccgctaaaagacgccgaagacgcttaa
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